Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01830 ATGGCAGTTTCTTCTGCATCTGCTTCCTCCAAACTTATACTATTCCCCCATGCTTCATCTTCTTCCCTTATCTCCACACCCTTCCGTTCCTCCACCAACACCCACAAACTATCCCCTCTCTCCTcctccttcctccaccccaccaccgtcctccgccgcaccccctcctccaccactaccaccacctccccgcgccgcccccTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGCCCTTGCCGCCCTCGGCAACAGCGCCCCGAAGAAGTACGACGAGATCGACGCCGCCCCGGAGGAACGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTTGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCTTAGCCAAGCAAGTCGGTGTCCCCAACATGGTCGTCTTCCTCAACAAGCAAGACCAAGTCGACGACGAAGAGCTTCTCCAACTAGTCGAACTCGAAGTTCGCGACCTTCTTACCTCCTACGAATTCCCCGGTGACGATACCCCCATCGTCTCCGGCTCCGCACTCTTAGCCCTAGAAGCCCTTATGGCGAACCCTGCCATCAAACGCGGCGACAACGAGTGGGTCGACAAAATCTACAAACTCATGGACGAAGTCGACGACTACATTCCCATCCCCCAGCGCCAGACCGACCTCCCATTCCTCCTCGCCGTCGAAGACGTTTTCTCCATCACCGGCCGTGGGACCGTCGCCACCGGCCGCGTAGAGCGTGGCACCGTCAAAGTAGGGGAAACTGTTGACCTTGTAGGATTGAGAGAGACAAGAAACACAACGGTCACAGGTGTGGAAATGTTCCAGAAGATTCTAGACGAAGCCCTCGCCGGGGACAACGTGGGGCTGTTGCTGAGAGGGGTTCAAAAGACGGACATCCAGAGAGGGATGGTGTTGGCGAAGCCTGGCACGATTACGCCGCACACCAAGTTCTCAGCGATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGGAGACATTCACCTTTCTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTGACTGGGAAGGTTACGGCTATCACCAACGATAGGGATGAAGAGTCGCAGATGGTGATGCCCGGTGACCGTGTGAAGATGGTGGTGGAGCTCATTGTGCCTGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGGGAAGGTGGCAAGACCGTTGGTGCAGGTGTTATCCAATCCATCATTGAGTGA 1443 0.5433 MAVSSASASSKLILFPHASSSSLISTPFRSSTNTHKLSPLSSSFLHPTTVLRRTPSSTTTTTSPRRPLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRDLLTSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIYKLMDEVDDYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01830 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 307 IPR027417 -
Gma04g01830 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 379 479 IPR009001 -
Gma04g01830 480 TIGRFAM EF-Tu: translation elongation factor Tu 73 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gma04g01830 480 CDD EFTU_II 292 378 IPR033720 -
Gma04g01830 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Gma04g01830 480 Pfam Elongation factor Tu GTP binding domain 81 282 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 Gene3D Translation factors 287 415 - -
Gma04g01830 480 MobiDBLite consensus disorder prediction 27 65 - -
Gma04g01830 480 CDD EFTU_III 381 475 - -
Gma04g01830 480 Hamap Elongation factor Tu [tuf]. 72 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gma04g01830 480 PANTHER ELONGATION FACTOR TU-RELATED 34 480 - -
Gma04g01830 480 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 PRINTS GTP-binding elongation factor signature 165 176 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 Pfam Elongation factor Tu domain 2 306 374 IPR004161 GO:0005525
Gma04g01830 480 PANTHER ELONGATION FACTOR TU 34 480 - -
Gma04g01830 480 Pfam Elongation factor Tu C-terminal domain 379 478 IPR004160 -
Gma04g01830 480 TIGRFAM small_GTP: small GTP-binding protein domain 84 216 IPR005225 GO:0005525
Gma04g01830 480 Gene3D Translation factors 419 479 - -
Gma04g01830 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 285 IPR000795 GO:0003924|GO:0005525
Gma04g01830 480 Gene3D - 73 284 IPR027417 -
Gma04g01830 480 SUPERFAMILY Translation proteins 286 382 IPR009000 -
Gma04g01830 480 CDD EF_Tu 82 284 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01830 Gma-Chr4 48406021 48408115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01830 79 478 Eukaryotic Initiation Factors Gene Family AT5G60390 29.888 1.21e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01830 K02358 - gmx:100805960 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01830 04 48406021 48408115 Gma04g01830 04 48406021 48408115 ECH
Gma04g01830 04 48406021 48408115 Gma06g01579 06 15337159 15338598 GST
Gma17g01162 17 10128149 10129970 Gma04g01830 04 48406021 48408115 PCT
Gma05g00400 05 3763139 3764973 Gma04g01830 04 48406021 48408115 PCT
Gma04g01830 04 48406021 48408115 Gma17g01162 17 10128149 10129970 PCT
Gma04g01830 04 48406021 48408115 Gma05g00400 05 3763139 3764973 PCT