Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01828 ATGAGTGTTCCAATGGAGACGGAGCTCTCAACCGACCAAAACGGCGCTTCTTCCCAACACTCACTTTCCGTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACTTTCCAGCACAGCTAAAATCGACGACGTTCGTTCCGCCGTTGAGGGGATGTTAGAAAAGAGGAGTTTGAGCTATAACGATGGACCCATTCCGGTGCCTCTTGATGACGCGTTTCTAGCAGATAACGTGCAAAGAATTTGTGTTTGTGGATGTGATACTGATGAGGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGCGAGGAAGGGCCATGTGAGGATATAAGCTCTGATGGCCAATCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGACGGCATGTGGGAAAGCTTAATATACGAATCTGGTCTAAAGCAACGGTTATTACGATATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTTTGTTACATGGACCACCTGGGACTGGAAAGACGTCGTTATGTAAAGCATTAGCTCAGAAATTATCAATTCGATTCAATTCGAGATACCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTATTGATTGATGAAGTCGAAAGCCTTGCCGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCGCCAAATGTGATAATTCTAACCACCTCCAACATAACTGCGGCTATTGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTACAGGAAATGATGCGTACAGGGATATTGACTAGTTTACAGGATTGTAAGAACGCCATGCTTCCTCATTACGCTAGTGCGAAAGATAGGTTGAACACTCTAGATTTTCATGAGGACGCTACATTCATGCAACTGTGCAAACAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCGTTGAGAAAGCTTCCATTTTTGGCACATGCTGCGCTTGCAAATCCTTTTGAATGCAACCCTATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1347 0.4284 MSVPMETELSTDQNGASSQHSLSVPEDKVLVPVEVTLKLSSTAKIDDVRSAVEGMLEKRSLSYNDGPIPVPLDDAFLADNVQRICVCGCDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEMMRTGILTSLQDCKNAMLPHYASAKDRLNTLDFHEDATFMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFECNPIKFLCTMVETAKRERSELPD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01828 448 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 186 204 IPR001270 GO:0005524
Gma04g01828 448 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 300 314 IPR001270 GO:0005524
Gma04g01828 448 SMART AAA_5 182 334 IPR003593 -
Gma04g01828 448 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 19 445 IPR044539 -
Gma04g01828 448 Gene3D - 125 351 IPR027417 -
Gma04g01828 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 418 IPR027417 -
Gma04g01828 448 Pfam ATPase family associated with various cellular activities (AAA) 186 331 IPR003959 GO:0005524|GO:0016887
Gma04g01828 448 MobiDBLite consensus disorder prediction 1 23 - -
Gma04g01828 448 ProSitePatterns AAA-protein family signature. 304 323 IPR003960 GO:0005524|GO:0016887
Gma04g01828 448 CDD AAA 184 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01828 Gma-Chr4 48382840 48388589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01828 186 368 Calmodulin-binding Proteins AT3G56690 30.270 2.56e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01828 K22399 - gmx:100812167 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01828 04 48382840 48388589 Gma04g01828 04 48382840 48388589 ECH
Gma04g01828 04 48382840 48388589 Gma06g01583 06 15380170 15386532 GST