Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01820 ATGGAATCCAAACCCGCTCAAACTATCAAGCTTCTCTGTAGCTACGGCGGCAAGATTCTCCCACGCGCCACCGACGGCGAACTCCGTTACGTCGGCGGCCACACCAGAGTCCTCACCGTCGACCGTTCCATTTCCTTTCCAGAATTGATGGTGAAGCTACGCGTATTTTGTGGTTCGTCTGTGATCTTGCGGTGTCAATTACCCAAGGGAGACTTGGAGACCTTGATATCCATCACCAACGACGAAGATCTCGCTAGCATAATCGAAGAATACGACCGTTCCTCGTTGAAATTGGCGCATCCGTTGAAGATCAAAGCCGTTCTCTCGCCGCCGAAATCGATGAAGAAAGCTTCGCCTGTTCCATCGTCGGCGTCGGCGTCGTCCAGCGCCACACACTCTCCGTCCGGATCGCCGCACACCTCCACCGAATCGCTGCCGTACGCGGCGTTCCACCGCATCGGCCGCCACAACCGCCCGCCGGTTGTGTATGCTATCGGCGCGGCGAAGGCATGTTGCTACACGCAGTTCGATGGGAGCCCTAGGTTCCTGTACCGTGGACCTCACTGCAATTATTACTGCCACTGA 585 0.5641 MESKPAQTIKLLCSYGGKILPRATDGELRYVGGHTRVLTVDRSISFPELMVKLRVFCGSSVILRCQLPKGDLETLISITNDEDLASIIEEYDRSSLKLAHPLKIKAVLSPPKSMKKASPVPSSASASSSATHSPSGSPHTSTESLPYAAFHRIGRHNRPPVVYAIGAAKACCYTQFDGSPRFLYRGPHCNYYCH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01820 194 MobiDBLite consensus disorder prediction 116 143 - -
Gma04g01820 194 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Gma04g01820 194 MobiDBLite consensus disorder prediction 110 143 - -
Gma04g01820 194 SUPERFAMILY CAD & PB1 domains 25 114 - -
Gma04g01820 194 CDD PB1_UP2 12 99 - -
Gma04g01820 194 PANTHER PB1 DOMAIN PROTEIN 1 194 - -
Gma04g01820 194 SMART PB1_new 23 102 IPR000270 GO:0005515
Gma04g01820 194 PANTHER OS05G0427100 PROTEIN-RELATED 1 194 - -
Gma04g01820 194 Gene3D - 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01820 Gma-Chr4 48313208 48314021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01820 9 93 MAP Kinase Kinase Kinase AT5G57610 48.235 7.48e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01820 - - gmx:100810563 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01820 04 48313208 48314021 Gma04g01820 04 48313208 48314021 ECH
Gma04g01820 04 48313208 48314021 Gma06g01589 06 15431859 15433086 GST
Gma17g00799 17 6694318 6695034 Gma04g01820 04 48313208 48314021 PCT
Gma04g01820 04 48313208 48314021 Gma17g00799 17 6694318 6695034 PCT