Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01818 ATGACTACACGCTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTGAGTGCCGGCCATGGCCGCATCGGGAAGCACCGGAAGCACCCTGGAGGACGCGGTAATGCCGGAGGCATGCACCACCACCGGATCCTCTTTGACAAGTACCACCCTGGGTTCTTCGGCAAGGTCGGAATGCGCTATTTTCACAAGCTCCGCAACAAATTCTACTCTCCGATCCTCAACATCGACAAGCTCTGGTCCCTGGTTCCGCAAGAAGTGAAGGACAAGGCCTCCAAGGAGAACAAGGCGCCGCTGATCGACGTCACGCAGTTCGGGTACTTTAAGGTTCTCGGAAAGGGTGTTTTGCCGCAGAACCAGCCCGTTGTTGTCAAAGCTAAGCTTATTTCCAAGATCGCTGAGAAGAAGATCAAGGAGGCTGGCGGTGCTGTTGTTCTCACCGCCTGA 444 0.5495 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01818 147 MobiDBLite consensus disorder prediction 1 35 - -
Gma04g01818 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Gma04g01818 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Gma04g01818 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Gma04g01818 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
Gma04g01818 147 Gene3D - 58 147 - -
Gma04g01818 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Gma04g01818 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01818 Gma-Chr4 48288285 48289085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01818 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.395 7.31e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01818 K02900 - gmx:100798197 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01591 06 15462449 15463352 Gma04g01818 04 48288285 48289085 ECH
Gma04g01818 04 48288285 48289085 Gma04g01818 04 48288285 48289085 ECH
Gma04g01818 04 48288285 48289085 Gma06g01591 06 15462449 15463352 GST
Gma17g00804 17 6726517 6727384 Gma04g01818 04 48288285 48289085 PCT
Gma05g00391 05 3697105 3697545 Gma04g01818 04 48288285 48289085 PCT
Gma04g01818 04 48288285 48289085 Gma17g00804 17 6726517 6727384 PCT
Gma04g01818 04 48288285 48289085 Gma05g00391 05 3697105 3697545 PCT