Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01801 ATGAGTATGGGTCCCATCAACATAAAGGGTGAAATAGAGAGAGTGAATGGGAAGGAACTGAGTTACAGTGAATTTGTGAAGAGATATATGGAGAAGAACCAGCCAGTGGTGCTCACTGGCCTAATGGACCCTCATTATTGGAGGTCTTCCACTGATTGGGTCACCCTTCAGGGCCAACCCAACTTTCAATATTTCTCCACTCACTTTGGTGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGATGGTATCAGATTTTATAGCACGGTGCCTTCAACTTGAGGAGGCTTCTGCTGTTCAGTGTTATAATGAAAATAGTTCAAGTAATGGTCCCTCTATATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGTAGCGTACGTCACTCCAATGTTCTTTTGTGATGACTGGCTCAACCTGTATCTGGACAACTTCAGAATACATATTGATTCTGACACACAACAACCAGATAAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGGAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCAAACTCAAAGTTTCCTGGTTTTAGCGAGGCTATCTGGTTAGAATGCACACAAAATGCAGGTGAAATTATATTTGTTCCAAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATCTCGTACTTTGCCTTGGCCAACTTGGTGTTGCTTCGTTATATGAATAGGAGATATGGAAATGGCACTGGAAGTTCATCAACAATATCTCAGCATTTTTCCATGAATCTTGGGTGTTTAAGGAAGATTGCATCAGAGATGAAAAGCATGCATGCTCTAGAAGGAAATCATGATTATGTTGTGGATATGATTGAAGCATTTGAAGATCCTAGGTTTTCCAAATTATGCATGCATGTAGGAAGAACATATATAATGATACAAGAGCAATCTTACTTGTCCTTGGATTTTGAGTGCACTTCAATGTGTGATTTGGTGGACCTCAATGATATGAAATCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGGTGTTGCAGAACTGGGTGACTGTTTCATTGAGGAGCAACCTATACTCCATGTTGCTTGA 1485 0.3899 MSMGPINIKGEIERVNGKELSYSEFVKRYMEKNQPVVLTGLMDPHYWRSSTDWVTLQGQPNFQYFSTHFGASKVQVADCDTREFTDQKREEMMVSDFIARCLQLEEASAVQCYNENSSSNGPSISVPYLKDWHFVKEYPEYVAYVTPMFFCDDWLNLYLDNFRIHIDSDTQQPDKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSGNVCGKKRWLFLDPSQCHLVFDRNMKNCVYNIFDEVSNSKFPGFSEAIWLECTQNAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFALANLVLLRYMNRRYGNGTGSSSTISQHFSMNLGCLRKIASEMKSMHALEGNHDYVVDMIEAFEDPRFSKLCMHVGRTYIMIQEQSYLSLDFECTSMCDLVDLNDMKSYTSQIYTPEDLIKFIDNGVAELGDCFIEEQPILHVA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01801 494 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 9 479 - -
Gma04g01801 494 Gene3D Cupin 1 291 - -
Gma04g01801 494 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 9 479 - -
Gma04g01801 494 ProSiteProfiles JmjC domain profile. 127 307 IPR003347 -
Gma04g01801 494 SMART cupin_9 127 307 IPR003347 -
Gma04g01801 494 Pfam Cupin-like domain 24 290 IPR041667 -
Gma04g01801 494 SUPERFAMILY Clavaminate synthase-like 8 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01801 Gma-Chr4 48054638 48059695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01801 10 299 Glycosyltransferase AT1G78280 24.579 6.50e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma04g01801 Cupin_8 8e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01801 - - gmx:100803814 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01801 04 48054638 48059695 Gma04g01801 04 48054638 48059695 ECH
Gma04g01801 04 48054638 48059695 Gma06g01606 06 15656251 15658126 GST