Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01793 ATGGAGAGCAGCCTCTACGACTTTTACTATTCAGCCACTTACTCAGACGAGTCAACAATGGCTCCATTTGCGCCGTCTAACAAGCCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGTACTTCGTGCTAAAGTTGCTTCCCATCCTCTATTTCCTCACCTCCTTCATGCCTACATGGATTGCCACAAGGTGGGAGCGCCGCAAGATGTGGCACACCTATTAGAAGGAATCAAAGGAGAGCATACATCTGGGGTGTGTCAGATATCTGAATCTGAAGGCTTCTTGGGTACGGATCCCGAGCTTGATGATTTCATGGGAACGTTTTGCGATTTATTGGTGAAGTACAAATCAGATCTTTTAAAGCCCTTTAACGAGGCAACAATGTTCCTCAACCTCATGGAAACTCAGCTTCACTCCATCTGTAACAACACTCCTCCTCAACCTGATGAAGTTACTCATGGATCACCTGGAAAAGATCTTAGTAGGGTGAAGAAAGAGGCAATTGAGGGCAAGAGGATGGAAGTTCAAGAGCTGAAGGATAACCTTCTACGTAGATATAGCGGTTATATTACTAATCTGAGGCATGAATTTTCCAAAAAGAAGAAGAAAGAAAAACTACCAAAAGAAGCAAAGCAAATCTTACTTTCATGGTGGAATGTTCACTTTAAATGGCCATACCCAACGGATGCGGATAAGGTTGCCTTAGCTGAATGGACTGGTTTAGACCAAAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACAGAGGAAATGCACGCTGAAATTTTGGATGATTTGCAAAATCCTAATTTCTCTAACCCTAACAAAACCCCCAAAATTCAAAGCAGAAGTTGGAGATCCGGCAAGTTCAAGATTGTTGGAGGGAGGAGGAGATTCGACGATGATGACCAAGAGAAAGAGGTAGCAAATGGAGTCAAACTGCGAGTCCGCATGGCGATTGTGGATGAAGAAGCAGAAGCTGCTTGA 1005 0.4328 MESSLYDFYYSATYSDESTMAPFAPSNKPVFGKEEDVSKVLRAKVASHPLFPHLLHAYMDCHKVGAPQDVAHLLEGIKGEHTSGVCQISESEGFLGTDPELDDFMGTFCDLLVKYKSDLLKPFNEATMFLNLMETQLHSICNNTPPQPDEVTHGSPGKDLSRVKKEAIEGKRMEVQELKDNLLRRYSGYITNLRHEFSKKKKKEKLPKEAKQILLSWWNVHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTEEMHAEILDDLQNPNFSNPNKTPKIQSRSWRSGKFKIVGGRRRFDDDDQEKEVANGVKLRVRMAIVDEEAEAA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01793 334 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Gma04g01793 334 SMART ELK_2 177 198 IPR005539 GO:0003677
Gma04g01793 334 Pfam ELK domain 177 198 IPR005539 GO:0003677
Gma04g01793 334 SMART KNOX2_2 91 142 IPR005541 GO:0003677|GO:0005634
Gma04g01793 334 Pfam KNOX2 domain 96 141 IPR005541 GO:0003677|GO:0005634
Gma04g01793 334 SMART KNOX1_2 39 83 IPR005540 GO:0003677|GO:0005634
Gma04g01793 334 Gene3D - 195 270 - -
Gma04g01793 334 SUPERFAMILY Homeodomain-like 198 266 IPR009057 -
Gma04g01793 334 Pfam Homeobox KN domain 217 256 IPR008422 GO:0003677|GO:0006355
Gma04g01793 334 Pfam KNOX1 domain 41 79 IPR005540 GO:0003677|GO:0005634
Gma04g01793 334 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 278 - -
Gma04g01793 334 ProSiteProfiles ELK domain profile. 177 197 IPR005539 GO:0003677
Gma04g01793 334 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 31 278 - -
Gma04g01793 334 SMART HOX_1 199 264 IPR001356 GO:0003677
Gma04g01793 334 Coils Coil 165 185 - -
Gma04g01793 334 CDD homeodomain 212 260 IPR001356 GO:0003677
Gma04g01793 334 ProSiteProfiles 'Homeobox' domain profile. 197 260 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01793 Gma-Chr4 47930484 47939764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01793 5 278 Homeobox Transcription Factor Family AT1G23380 49.466 1.48e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma04g01793 KNOX2 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01793 - - gmx:102662019 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01793 04 47930484 47939764 Gma04g01793 04 47930484 47939764 ECH