Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01785 ATGGATCTTGAGACAATGTTCAAAGAAACCTATGTCTCACAGCCAACGCATTTACAAGAAAGCTGCTTGCAACCTAGCTTGAAAGATGTGCTTCTTTCATCTTATGGATTCTTTAAAGATTTTCACCATATTGATCAGTTTCATCACGTGAATATCTCCTCATCCAATACAATCCAAACTCCAAATTTTGATGCTTTTGACAATTTCACAAATACAGGTTCATCACCTGATTTTGATTTTATGATTAGTCAAAGGAATCAACTAGATATGATGGTTGCAAATCAAAGATTTTTGCCTTTTAATCCTCAAGAAATCAAGCCCTCCAATTTTGTTGTACCATATGAAGTTTCATGCACATCCCCGGTGTATTATTACAAAAGAGTTGGCGTGAACAAAAATAATAAATCCTACCCAACCACTAGAAGAACATTCAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGGAAGTGGACAATAGACGATGGGTTTACAATATCCAATTCTATACAACCTCATATTGCGAAGATATTGCCCGGAAGAATTGGAAAACAGCGCAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACACATGGACTGATGAAGAGGATAAAGTACTAATCGAAGTTCATGATGAAGTAGGAAATAAATGGGCAGAGATTGCTACGAGGTTGCCAGGAAGAACTGAGAACTCAATCAAGAACCATTGGAATGCAACCAAGAGAAGGCAACATTCCAAAAGAAAGTGTCGCTCAAAGTACCTTAGAGGCACTCTTCTGCAAGAGTACATCAAAAGCCTGAACTTAGACAAGAACCCCCCAAGAGATTATAGGAGAAAATGTTCTTCTAATTATGGTAGTGCCATCATGAGTGATGACAACAAAATCAGCACAAGCAAAATCACTGCACCAGCTTTGCCCCAGACAGCATTTCAATTTTGTGCTGCCACTGATTTCTTGGCACCAAATTATGATTTTAGAGTGGTCCCGGATTTCTTCTTTGGTGAGAATTTGTTTGAAGAAGGGTGTAACGTTGATTCTCTTCTGGATGGTGTGCCTTGTGCTCCTCTTATGGATAAGAAAGATTTTGAAGAAAAATTGCAATGTGATGATCTTACAATGTGTGTTCCTTTTGTCAATATCGATGAAAATCATATTGAGACAGAGATGCCACTAGAGATGTTGGAGGTTGAACTTAAGAAGGAGCTGGATTTGGTTGAGATGATGTCTCAGATTAATAATGAAATTCTTCATGTATGA 1269 0.3814 MDLETMFKETYVSQPTHLQESCLQPSLKDVLLSSYGFFKDFHHIDQFHHVNISSSNTIQTPNFDAFDNFTNTGSSPDFDFMISQRNQLDMMVANQRFLPFNPQEIKPSNFVVPYEVSCTSPVYYYKRVGVNKNNKSYPTTRRTFKVRKKSNIVKGKWTIDDGFTISNSIQPHIAKILPGRIGKQRRERWHNHLRPDIKKDTWTDEEDKVLIEVHDEVGNKWAEIATRLPGRTENSIKNHWNATKRRQHSKRKCRSKYLRGTLLQEYIKSLNLDKNPPRDYRRKCSSNYGSAIMSDDNKISTSKITAPALPQTAFQFCAATDFLAPNYDFRVVPDFFFGENLFEEGCNVDSLLDGVPCAPLMDKKDFEEKLQCDDLTMCVPFVNIDENHIETEMPLEMLEVELKKELDLVEMMSQINNEILHV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01785 422 Gene3D - 142 198 - -
Gma04g01785 422 Pfam Myb-like DNA-binding domain 200 241 IPR001005 -
Gma04g01785 422 ProSiteProfiles Myb-like domain profile. 194 244 IPR001005 -
Gma04g01785 422 PANTHER BNAC03G62830D PROTEIN 86 273 - -
Gma04g01785 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 248 IPR017930 -
Gma04g01785 422 Gene3D - 201 261 - -
Gma04g01785 422 SMART sant 198 246 IPR001005 -
Gma04g01785 422 PANTHER MYB PROTEIN-RELATED 86 273 - -
Gma04g01785 422 CDD SANT 201 244 IPR001005 -
Gma04g01785 422 SUPERFAMILY Homeodomain-like 173 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01785 Gma-Chr4 47785768 47787670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01785 79 356 MYB Transcription Factor Family AT4G18770 46.667 1.79e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma04g01785 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01785 K09422 - gmx:102662267 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01619 06 15902776 15904721 Gma04g01785 04 47785768 47787670 ECH
Gma04g01785 04 47785768 47787670 Gma04g01785 04 47785768 47787670 ECH
Gma04g01785 04 47785768 47787670 Gma17g00832 17 7026361 7028371 PCT
Gma04g01785 04 47785768 47787670 Gma05g00365 05 3427998 3429951 PCT