Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01771 ATGAAGAAGAGAGTAGCAAGCACCAGCACTGAGTCCTCTAAACTTGATCGCAAAACCATTGAAAAGAACCGCAGAATTCACATGAAATCCCTCTGCCATCAGCTTTCTTCTCTTATTCCTCCCAACCTCAAGCCTGCCAAATCCAAGTTGATGCTAGGGCAGCGGGACCAGCTGGATCTTGCAGCAAGGTATATAAAACACATGAATGAGAGAATAGAGAAACTGAAGAGGCAAAAGGAGCAAGTGATGTCAAACAATGATGATAGAAAAATGTTCAACAATAATGTTGAGTCCAAATTGCCAATAGTTGAGCTGAGAGACTTGGGTTCCAGCATTGAAGTGATGTTGGTGAGTGGGTTGAACAAAACATTCATGTTGTACGAAGTAATTAGTGTACTCGAGGAAGAAGGTGCTGAAGTTGTCACTGCTAGCTTCTCAACTGTTGGCGACAAGATATTTTACGTTGTTCATGCCCAGGTTAAAATATCAAGAGTGGGAGTAGAGACGACGAGGGCATATAATAGACTTCAAGAGTTCATTGCCCCACCAGAAATCTGGCCGGAAGATGTGTGA 573 0.4293 MKKRVASTSTESSKLDRKTIEKNRRIHMKSLCHQLSSLIPPNLKPAKSKLMLGQRDQLDLAARYIKHMNERIEKLKRQKEQVMSNNDDRKMFNNNVESKLPIVELRDLGSSIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKIFYVVHAQVKISRVGVETTRAYNRLQEFIAPPEIWPEDV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01771 190 Gene3D - 13 92 IPR036638 GO:0046983
Gma04g01771 190 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Gma04g01771 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
Gma04g01771 190 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g01771 190 Coils Coil 58 85 - -
Gma04g01771 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 181 IPR015660 GO:0003700|GO:0006357
Gma04g01771 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Gma04g01771 190 PANTHER TRANSCRIPTION FACTOR BHLH162 9 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01771 Gma-Chr4 47261961 47264008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01771 7 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.416 7.11e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma04g01771 HLH 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01771 - - gmx:100790403 368.622