Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01767 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTCGATGGCTTTTTCTTGTCCATGCTCGCCACCAGCATAGCTATTGTGGCAATTAATTGGAAGCGGTATCAATCTTGTACTCACCCTTTGCACATATGGACTGTGGTTGACTACGCTGCTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCCGCAGAGATATGCTCGCTTCTGTGGAAGAGTAGTTGTACTTTCAATTCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTGTGGTTCAGCAACACTAAAATCTGCTTGCCTGGAGGGGGCCAGAAATGGGGCTTCCTTATCTGGTTACTTTTTAGCTACTGTGGACTCCTCTGTATTGCTTGCTTGGCAATGCGGAAGTGGTTAAAACGAAGACAAGCACGCATGTTAGGTGCTCAAGAGGGTATCCCTGTATCCGCATTTGGGGTTCTAGTTGAAATGATCCGAGTACCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGAGTATGGCCCAAGATGCTGCATATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCATCGTTCAGGTTAACTGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAATTCCATGTAGGAAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGTTGCTCAGTATTTCCTAATCTTGATCTCAGTGCTCTGTCCAATATCCGTTCTGAGTCTGAACAGTCTTCTGCCACTGCTGTGACAAGCAGAGATATGACAGGCCAAACTTCTAGTCAGAGTTACCTTCTGAGATTACAGGGGCCTCTCCACCCAGTTTGTGTTGACTTTGCAGGGCCAGCTGGTGAGACAGACAATGCTTTGGAAAATGCTGAAAATGGTGTTGTACCTGTTGTGACTCAAAATATGTCAACTAGAGATCAGGCCACTTCTGGTGAACACATGCCTGTTGGTCTTTCCTCTTCCCAAAATTAG 1137 0.4591 MAIRGVNFKWFDGFFLSMLATSIAIVAINWKRYQSCTHPLHIWTVVDYAAVFTFRLLMFVDNGLASGMGLDFGWPQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSNTKICLPGGGQKWGFLIWLLFSYCGLLCIACLAMRKWLKRRQARMLGAQEGIPVSAFGVLVEMIRVPDWAFEAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELPSFRLTAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRSESEQSSATAVTSRDMTGQTSSQSYLLRLQGPLHPVCVDFAGPAGETDNALENAENGVVPVVTQNMSTRDQATSGEHMPVGLSSSQN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01767 378 MobiDBLite consensus disorder prediction 358 378 - -
Gma04g01767 378 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Gma04g01767 378 SUPERFAMILY RING/U-box 216 282 - -
Gma04g01767 378 SMART ring_2 234 274 IPR001841 -
Gma04g01767 378 Pfam Ring finger domain 233 275 IPR001841 -
Gma04g01767 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Gma04g01767 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Gma04g01767 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01767 Gma-Chr4 47207866 47213101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01767 58 358 C3H Transcription Factor Family AT3G47990 68.954 3.68e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01767 K16284 - gmx:100786854 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01767 04 47207866 47213101 Gma06g01635 06 16156225 16161946 GST
Gma17g00847 17 7179772 7185469 Gma04g01767 04 47207866 47213101 PCT
Gma05g00351 05 3280403 3285778 Gma04g01767 04 47207866 47213101 PCT
Gma04g01767 04 47207866 47213101 Gma17g00847 17 7179772 7185469 PCT
Gma04g01767 04 47207866 47213101 Gma05g00351 05 3280403 3285778 PCT