Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01739 ATGGCGTTCTTCTTGAACCAAACTAGTATCGCTTCCCATTTTCGATCTCACTCTCAGCAGAAGACTGAAGATTTGGCTTCTTTTCCTCGCCGTCGATTCCACGTCGAACCAGGGGCTCGTGAAAAAGCTCTCTTGGCAGAAGATGCAACTCTGAAACCGTTCAAATCGTACAAGAAGAGTGTAAAAAAGCTTAGAAAAATTGGGAATGCCCTTACAATTGTTGTTGTTGCAGGATGCTGTTACGAAGTATATGTCAGAGCTTTTACAAGAGAGGAAGCTCAGAAACTATGTCTACTGTCTGATGATAATGTTGATTGGCTGGTCACAAATCTGTTGTGGCTTCAGCCTTCAGGGACTACTCAGAAGTGCAAAGCATGTGAGAAGACTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCATGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAATTATTGTTCCTTTGAGGGTGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCAAGACTTGAAAGATCTGCCGATCAGGTCCAAACCAATACAAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTTTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGCACCATCATACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGACAAGCAAGAAAACGATGAAGGGGTGACGGAGAACAGAATAACTGAGTAA 843 0.4152 MAFFLNQTSIASHFRSHSQQKTEDLASFPRRRFHVEPGAREKALLAEDATLKPFKSYKKSVKKLRKIGNALTIVVVAGCCYEVYVRAFTREEAQKLCLLSDDNVDWLVTNLLWLQPSGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSADQVQTNTKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRHHHTQLFKQKGNFSQLDKQENDEGVTENRITE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01739 280 SMART lim_4 122 174 IPR001781 -
Gma04g01739 280 SMART lim_4 221 270 IPR001781 -
Gma04g01739 280 CDD LIM1_SF3 119 181 - -
Gma04g01739 280 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 248 274 - -
Gma04g01739 280 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 117 248 - -
Gma04g01739 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 247 - -
Gma04g01739 280 Pfam LIM domain 123 177 IPR001781 -
Gma04g01739 280 PANTHER OS06G0237300 PROTEIN 248 274 IPR045268 GO:0051015
Gma04g01739 280 PANTHER OS06G0237300 PROTEIN 117 248 IPR045268 GO:0051015
Gma04g01739 280 Gene3D Cysteine Rich Protein 207 273 - -
Gma04g01739 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 148 - -
Gma04g01739 280 Gene3D Cysteine Rich Protein 118 187 - -
Gma04g01739 280 ProSitePatterns LIM zinc-binding domain signature. 123 157 IPR001781 -
Gma04g01739 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 189 - -
Gma04g01739 280 ProSiteProfiles LIM domain profile. 121 181 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01739 Gma-Chr4 46791096 46800934 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma04g01739 LIM 1.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01739 K09377 - gmx:100500444 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01739 04 46791096 46800934 Gma04g01739 04 46791096 46800934 ECH
Gma04g01739 04 46791096 46800934 Gma06g01655 06 16463023 16466670 GST
Gma17g00869 17 7374928 7378825 Gma04g01739 04 46791096 46800934 PCT
Gma05g00329 05 3046641 3060600 Gma04g01739 04 46791096 46800934 PCT
Gma04g01739 04 46791096 46800934 Gma17g00869 17 7374928 7378825 PCT
Gma04g01739 04 46791096 46800934 Gma05g00329 05 3046641 3060600 PCT