Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01736 ATGGGTGGCAACGGCAAGCACAGGTGGAAATTCTCCTTCCACCGTTCCTCATCCCAAACCTCCAATCCCGACCCGAACCAAGTTCCCAAGGAGTTCACCTGCCCCATTTCCGGCTCACTAATGTCCGACCCTGTCGTCGTAGCCTCGGGCCAAACCTTCGAACGCCTCGCCGTTCAACTCTGCAAAGACCTCAACTTCTCCCCGAAGCTGGACGACGGCACCCGACCCGACTTCTCCACCATAATCCCCAACCTCGCCATCAAAACGACGATCCTCCACTGGTGCGACAATTCCCGCACCCAACCCCCGCTCCCACCGGATTACGCCTCCCTCGAGCGCCACGTCAGAGAAGAAAAAGAAAAACAAGACCTAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCGGTGGCCGACAACCCTCCTGTCATCTTCTCCCACGCCGCCACCGAGTTAGGCCCCCGAGTCAATCACTTCAACTCCGGATCCTCCTCCGAGGAATCCGTCATCATCCCTCCGAGTCCGGGAACGCCGTTGCCGTTAACGATTCGTCCAACGTGCTTCTCTTCCTCCTCCTCCTCCTGCGAGATCGAAATCGAAAACCCCAACACACCGGCATCGGAGGAGGAAGAAGGGATATTGAAGAAATTGAAGAGTAACGAGGTGTTTGAGCAAGAAGAAGGCGCAATCGCGCTGAGGAAGATCACGAGGAGCAAAGAGGAGGCTAGGGTTTCGCTCTGCACGCCGCGGGTGCTGTTAGCGCTTCGTGGTTTACTCGCTTCCCGATACGGCGTCGTTCAGGTCAACGCAGTGGCGTCTTTGGTCAACCTTTCTCTTGAGAAGCAGAACAAGTTGAAGATCGTTAGGTCAGGGTTTGTGCCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCACTTTTTAGTTTGGCTTTGGACGATGACAACAAGATGGCGATTGGCGTTCTCGGCGCGTTGCATCCGTTGATGCACGCGCTTCGTGCCGAGTCCGAGCGGACTCGGCACGACTCAGCGCTCGCGCTGTATCATTTGTCACTTGTACAGAGCAACAGATTGAAATTGGTTAAACTCGGGGCTGTCCCCACGCTCCTCTCGATGGTGGTGGCGGGGAATTTGGCGAGCCGGGTGCTGCTGATTCTCTGCAACCTCGCCGTGTGCACCGAGGGGCGCACGGCGATGCTGGACGCCAACGCGGTGGAGATTCTGGTGGGGTTATTACGAGGGAACGAGTTGGACTCGGAGGCGAATCGGGAGAATTGCGTGGCGGCTTTGTACGCGCTGAGTCATAGAAGCTTGAGGTTCAAGGGTTTGGCCAAGGACGCGAGAGTGGTGGAGGTTTTGAAGGAGATCGAACAAACGGGAACggagagggcgagggagagggcgaggAAGGTGTTGCATATGATGAGGACTGTGGGAGATGGGGACGGTGATGAGATTGACGAGTTTTACGACTCGGCCGGATTGACTCGGAATCGGTACCGAGTTGGTGCTGCCAGGAATAACAACAACCTCGTCAACACGACCACGTTTTAG 1578 0.5507 MGGNGKHRWKFSFHRSSSQTSNPDPNQVPKEFTCPISGSLMSDPVVVASGQTFERLAVQLCKDLNFSPKLDDGTRPDFSTIIPNLAIKTTILHWCDNSRTQPPLPPDYASLERHVREEKEKQDLIRVSEKELLNAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIPPSPGTPLPLTIRPTCFSSSSSSCEIEIENPNTPASEEEEGILKKLKSNEVFEQEEGAIALRKITRSKEEARVSLCTPRVLLALRGLLASRYGVVQVNAVASLVNLSLEKQNKLKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESERTRHDSALALYHLSLVQSNRLKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVEILVGLLRGNELDSEANRENCVAALYALSHRSLRFKGLAKDARVVEVLKEIEQTGTERARERARKVLHMMRTVGDGDGDEIDEFYDSAGLTRNRYRVGAARNNNNLVNTTTF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01736 525 Pfam U-box domain 28 97 IPR003613 GO:0004842|GO:0016567
Gma04g01736 525 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Gma04g01736 525 PANTHER U BOX DOMAIN-CONTAINING 1 516 - -
Gma04g01736 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 516 - -
Gma04g01736 525 CDD RING-Ubox 34 80 - -
Gma04g01736 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Gma04g01736 525 MobiDBLite consensus disorder prediction 1 31 - -
Gma04g01736 525 SMART arm_5 361 399 IPR000225 GO:0005515
Gma04g01736 525 SMART arm_5 400 443 IPR000225 GO:0005515
Gma04g01736 525 SMART arm_5 279 319 IPR000225 GO:0005515
Gma04g01736 525 SMART arm_5 320 360 IPR000225 GO:0005515
Gma04g01736 525 Gene3D - 197 490 IPR011989 -
Gma04g01736 525 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Gma04g01736 525 MobiDBLite consensus disorder prediction 14 28 - -
Gma04g01736 525 SUPERFAMILY ARM repeat 212 483 IPR016024 -
Gma04g01736 525 SUPERFAMILY RING/U-box 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01736 Gma-Chr4 46762159 46764268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01736 1 525 U-box Gene Family AT5G65200 58.348 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01736 - - gmx:100784564 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01659 06 16501442 16503548 Gma04g01736 04 46762159 46764268 ECH
Gma04g01736 04 46762159 46764268 Gma04g01736 04 46762159 46764268 ECH
Gma04g01736 04 46762159 46764268 Gma06g01659 06 16501442 16503548 GST