Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01733 atgcctgcTAGACCAAATATAGCTTCACCATCTCCAGATCATCCAAAAGCAAATCCTTATGCCAGTAGTGTTTATTCTAGTAATGCCCTTCCTACTTATCCTAAAGTAGAGCATGAAGTTAGTAGATCAGCACCATTCAGTGGGTCTTCTGGTGGTCAGAACACAGGTTTTCACAATCCCCAATTTGAGGCGTCAAGGTCCTTGCAAAACTCATATGCTCGTCCACCTCAGCAGCCTATGTACCGTCATCCATCTCCAATGTACACTAACAAAGCGCTAATGGGAAGAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAACATTGAATCCATACCAGAGTATGTGGACTATTAAAGCCAGGGTAACATTTAAGGCAGAACTCAGGCACTATACCAATGCTAGAGGTGATCGCAAGGTGTTTTCTTTTGATCTTCTGGATTCTGATGGCGGAGAAATTCGGGCAACTTGCTTCAATGTTGTGGGTGATCAGTTCTACAATGTTATTGAAGCTGGTAAGGTATATCTAATTTTCAAGGGAAGCATAAAGCCAACTCAAAAGAATTTTAATCACCTTCCCAATGATCAAGAGCTGACCCTTGAGGTGGCATCAATTATACAACCATGCCTTGATGATAATGACTCAATTACATCACAAACATTTAATTATCGCCCCATTAGTGAAATTGAAAGTTTGGAAAACAACAGCATTGTGGATGTGATTGGTGTGGTGACTTCTATTAGTGCTAAAACATCAATCATGAGAAAAAATGGCACTGAAGTTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTCTACGGGGAAATTTTTGCATTGTAGAAGGACAAACGTTGCAAAGTATTTGTGATGTTGGGGAATTTCTAGTTTTGGCTACAAAAGCTATCAGAGTAAATGATTTCAATGGGAAGTCTGTCGGGACTATAGCCACTAGTCAGCTATATGTGGAGGCTGATTTTCCTGAGGCTTGTATACTGAAAATATGGTTTGAAAATGAAGGGAAGAGTGTCCCAACTCTCTCTATTTCCAGAGAAATGTCTAATCTAGGTAAGACTGATGTGCGAAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTAATTGGATATCTGTCTTTGCAGCTTTTCACACATTAAGGTTGATAACTTCTATTACCCAGGGTGCCCTCTCAAGATAA 1233 0.399 MPARPNIASPSPDHPKANPYASSVYSSNALPTYPKVEHEVSRSAPFSGSSGGQNTGFHNPQFEASRSLQNSYARPPQQPMYRHPSPMYTNKALMGRNEAAPRIIPIATLNPYQSMWTIKARVTFKAELRHYTNARGDRKVFSFDLLDSDGGEIRATCFNVVGDQFYNVIEAGKVYLIFKGSIKPTQKNFNHLPNDQELTLEVASIIQPCLDDNDSITSQTFNYRPISEIESLENNSIVDVIGVVTSISAKTSIMRKNGTEVQKRTLQLKDMSGRSVELTLRGNFCIVEGQTLQSICDVGEFLVLATKAIRVNDFNGKSVGTIATSQLYVEADFPEACILKIWFENEGKSVPTLSISREMSNLGKTDVRKTISQIKDEKLGTSEKPNWISVFAAFHTLRLITSITQGALSR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01733 410 SUPERFAMILY Nucleic acid-binding proteins 221 350 IPR012340 -
Gma04g01733 410 Gene3D - 102 212 IPR012340 -
Gma04g01733 410 MobiDBLite consensus disorder prediction 43 76 - -
Gma04g01733 410 PANTHER REPLICATION FACTOR A 1, RFA1 78 393 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma04g01733 410 MobiDBLite consensus disorder prediction 36 87 - -
Gma04g01733 410 PANTHER REPLICATION PROTEIN A SUBUNIT 78 393 - -
Gma04g01733 410 Pfam Replication protein A OB domain 226 329 IPR031657 -
Gma04g01733 410 Gene3D - 215 353 IPR012340 -
Gma04g01733 410 MobiDBLite consensus disorder prediction 1 24 - -
Gma04g01733 410 CDD RPA1_DBD_A 105 208 - -
Gma04g01733 410 Pfam OB-fold nucleic acid binding domain 116 204 IPR004365 GO:0003676
Gma04g01733 410 CDD RPA1_DBD_B 237 344 - -
Gma04g01733 410 SUPERFAMILY Nucleic acid-binding proteins 103 215 IPR012340 -
Gma04g01733 410 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 59 398 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01733 Gma-Chr4 46731490 46732722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01733 65 399 Core DNA Replication Machinery Family AT5G45400 59.701 7.50e-136 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01733 K07466 - gmx:100778597 713.375