Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01726 ATGGTCAAATCCTCCTCCAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACACAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGATGAAGCTGCAAAGTTGTTGCTTGGAAATGCCAATAATAGAACAAAAGTTAGACGCCTATACGATATTGCGAACGTTTTATCCTCCATGAACCTAATTGAGAAGACCCATACAACAAACACAAGAAAACCAGCATTTAGGTGGTTGGGTGTGAGAGGGAAAACATGGAGTGAATCAGCTCAGACAAATGTTAAAGAGTCACAGAAAAGGATGTTTGGATCTGACATAACAAACATAAATTTTAAAAGGAAAGTTGATTTGTCCATGGATGGCCAGAACTTTAAAACGCAAAACCAACAGGAAAATATTAGTCCCAGAGCTCAGCTGGAGAAAAAAAGCTTAAAAAAAGATGCAAAACAGACTTCAATGAGCTATCAGTTTGGCCCTTTCGCTCCAGCTTATGTGCACAAAGTTGGAACCTCTGAAAATAATAGTGTGAAACAGGTGCAAGACTGGGAAAGCCTCGCACAGGAGCATCGTCCTCAATATCAAAACCAAGCTTTGAAAGATCTATTCTCTCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGCTGCTAAAACTTTATAA 684 0.3874 MVKSSSKNENRREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNANNRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWSESAQTNVKESQKRMFGSDITNINFKRKVDLSMDGQNFKTQNQQENISPRAQLEKKSLKKDAKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQNQALKDLFSHYMEAWKSWYSEAAKTL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01726 227 PANTHER TRANSCRIPTION FACTOR E2F 6 222 IPR015633 GO:0000978|GO:0006357
Gma04g01726 227 SMART E2F_TDP_2 11 87 IPR003316 GO:0005667|GO:0006355
Gma04g01726 227 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 222 - -
Gma04g01726 227 Pfam E2F/DP family winged-helix DNA-binding domain 13 87 IPR003316 GO:0005667|GO:0006355
Gma04g01726 227 Gene3D - 5 89 IPR036388 -
Gma04g01726 227 SUPERFAMILY "Winged helix" DNA-binding domain 13 88 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01726 Gma-Chr4 46605407 46610896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01726 10 72 E2F-DP Transcription Factor Family AT3G48160 39.683 1.46e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma04g01726 E2F_TDP 2.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01726 K09391 - gmx:100776170 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01726 04 46605407 46610896 Gma04g01726 04 46605407 46610896 ECH
Gma04g01726 04 46605407 46610896 Gma06g01668 06 16643943 16647065 GST
Gma17g00880 17 7461294 7465427 Gma04g01726 04 46605407 46610896 PCT
Gma05g00320 05 2955233 2958390 Gma04g01726 04 46605407 46610896 PCT
Gma04g01726 04 46605407 46610896 Gma17g00880 17 7461294 7465427 PCT
Gma04g01726 04 46605407 46610896 Gma05g00320 05 2955233 2958390 PCT