Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01725 ATGTCTTCTTTGTCTACGCATCACACCTATAGCCGAAAGCAAAAATCTCTCGGCCTCCTGTGCACCAATTTTTTGAGTTTGTACAACAAGGAAGGTGTGCGATTAATCGGTTTGGATGATGCAGCTTCACGATTAGGAGTAGAAAGACGAAGGATCTACGACATCGTTAACATTTTAGAGAGTGTGCTAGCTAGAAAAGCTAAGAATCAATGTACCTGGAAAGGGTTTTCTGCAATTCATGTAGCCTTGCAAGAACTTAAGGATGAGGGTTTGAAGGAGAATCCTGGATCATCCGATGACTCCAATCCATCCATTAATTTAGTATTAACCGTTTTAGGTACATGA 345 0.4087 MSSLSTHHTYSRKQKSLGLLCTNFLSLYNKEGVRLIGLDDAASRLGVERRRIYDIVNILESVLARKAKNQCTWKGFSAIHVALQELKDEGLKENPGSSDDSNPSINLVLTVLGT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01725 114 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 98 - -
Gma04g01725 114 SMART E2F_TDP_2 12 75 IPR003316 GO:0005667|GO:0006355
Gma04g01725 114 Gene3D - 7 78 IPR036388 -
Gma04g01725 114 PANTHER TRANSCRIPTION FACTOR E2F 5 98 IPR015633 GO:0000978|GO:0006357
Gma04g01725 114 SUPERFAMILY "Winged helix" DNA-binding domain 11 73 IPR036390 -
Gma04g01725 114 Pfam E2F/DP family winged-helix DNA-binding domain 13 75 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01725 Gma-Chr4 46604722 46605351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01725 3 93 E2F-DP Transcription Factor Family AT3G48160 74.194 3.65e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma04g01725 E2F_TDP 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01725 K09391 - gmx:100818090 182.57