Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01724 ATGTCTCGAAAAGAAAATCTTATATCTGAATTGCATCCAAGGAAAGGGACATGGAAGATAGCGGTGTGTATAACCGATATGTGGGATGTTAAGAAGCACAATGGGAGACAAGCGATTGACATGGTCTTAATAGACCAAATGGGTGTAAAGATTGGGGCAACGCTATGGCAAGAGTTGTTCCCTGAATTTCAACCGAAGTTAACTTTAGGTTGTTCCTATTTGATCCAAAACATCAAAGTTGTGGACAATCAATCTGAATATAAAGTAAGTCCAATTCCATATTTGCTTTACTTTGTGAAAACAACATCTGTGAAGGAGGTTGAAAGACTTGAAATTCCTGCTAATGTACACGTGATAACTGAAATTGCTGATATTATTTCTGGCATTGCACCGCGACATACTTTAGTTGATTTTGTGGGTGTTGTCGCTGAAGTTATTGAACGAAAAATAGTGAATCCTGCATACAAGGTTACGGTGAAGTTGAGAGATAATAGTGATGCTGAGATCCTCATGACACTGTGGGAGGATTATGCTCTTCAGCTAGATGATGCTATTGAAAAAAACCATTTTGTTAGGGAGTCGTTGGTGCTTATGTTAACATTGGCTAAGATCAAAGATGCCAAAGAAGAAGGGAGTGGTTCGCAATCCCAGTATACCAGTAATTCACAAAGAGGTGATCGTGATAAGTTCTTGCATAATGCTCAGATGACCAGCTTAGGTGACATAAGCAGACTGAGAGAGGGTGGTGACGAGATCAAAGTGTTCCCTGAGTGTGTGGATGATTTGGTTGGTAAGACATTGGCACTCAGGTTCAAGTACCGTGTAAACATGCGCCAGTCTTCTGTGATGGATGTTAGCCAAGAAGAACATCATATCCAGACATTGACTTTCAAAATTGTTCTACAGGATGAACAAACTATAAGGAAGTCACCTGCATCGTGTGATGAGACTTCATCAGGGGATTACCATCCGAAGCCTTCATTGTCCCAGTCAGCTAACTATGACCCTGGGAACACTGCCTTCATCACCCCTGCCAAAAAATTGAGCGGTCAACAAGCCACAAATGAATTTGATTCTAAGGATACTACTGCGTATGAGCTATCCACAAACAAACATATTAAAGCTGAGTAA 1131 0.4067 MSRKENLISELHPRKGTWKIAVCITDMWDVKKHNGRQAIDMVLIDQMGVKIGATLWQELFPEFQPKLTLGCSYLIQNIKVVDNQSEYKVSPIPYLLYFVKTTSVKEVERLEIPANVHVITEIADIISGIAPRHTLVDFVGVVAEVIERKIVNPAYKVTVKLRDNSDAEILMTLWEDYALQLDDAIEKNHFVRESLVLMLTLAKIKDAKEEGSGSQSQYTSNSQRGDRDKFLHNAQMTSLGDISRLREGGDEIKVFPECVDDLVGKTLALRFKYRVNMRQSSVMDVSQEEHHIQTLTFKIVLQDEQTIRKSPASCDETSSGDYHPKPSLSQSANYDPGNTAFITPAKKLSGQQATNEFDSKDTTAYELSTNKHIKAE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01724 376 Gene3D - 5 107 IPR012340 -
Gma04g01724 376 MobiDBLite consensus disorder prediction 308 376 - -
Gma04g01724 376 PANTHER REPLICATION FACTOR A 1, RFA1 7 192 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma04g01724 376 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 7 192 - -
Gma04g01724 376 MobiDBLite consensus disorder prediction 308 364 - -
Gma04g01724 376 SUPERFAMILY Nucleic acid-binding proteins 7 108 IPR012340 -
Gma04g01724 376 SUPERFAMILY Nucleic acid-binding proteins 120 218 IPR012340 -
Gma04g01724 376 Pfam Domain of unknown function DUF223 41 126 IPR003871 -
Gma04g01724 376 Gene3D - 110 238 IPR012340 -
Gma04g01724 376 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01724 Gma-Chr4 46599104 46601876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01724 6 178 Core DNA Replication Machinery Family AT5G45400 23.497 8.13e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01724 - - gmx:113001430 468.774