Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01709 ATGGTAAGGTATCCTTGTGAAAAAATCAATGTCAAAAGGGGTGTGTGGACTACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAAGCATAGATCTGGTAATTGGACCTCTGTCCCCAAAAAATCAAGGCTCAAAAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACTAACTACCCCAGGCCTGATCTTAAAGACGACAACTTCACTACCCAAGAAGATCTAATTATGAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAGTAGCCCAGCAACTTCTTGGGAGAACAGACAATGATGTAAAGAACTATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGAATTGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTTCTGACTATGGAAACATTGGGGATTGCCAGAAACCAAGTACTCCAATTACGTCAACTAATAAGGACTTCAAGGATGCAATGATGTTAGGATCAGATCCCCGTCAAACCCTGCCACAAGGATTTACAAACATCAATGACCAGCCAAAGCTATCACCCAAGACCATCCCAGTGTCTATGTTTGGGGAAGATTGCTTGTCAAAAACTTCTTCACCATCTACTCCTTCTACATGTTTCACTTCTTCAGCTTTTAGTTGGAATGACTTCCTCTTGGAAGATGCTTTTATACCATTTACTAACCAAGAACAAAGACTTGGTGAGCCAAATAGAGGATGTGACCAGACAAAGTTGTTGGAATAA 750 0.4173 MVRYPCEKINVKRGVWTTEEDTKKLAFGSKHRSGNWTSVPKKSRLKRCGKSCRLRWTNYPRPDLKDDNFTTQEDLIMKLHAAIGSRWSIVAQQLLGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLISDYGNIGDCQKPSTPITSTNKDFKDAMMLGSDPRQTLPQGFTNINDQPKLSPKTIPVSMFGEDCLSKTSSPSTPSTCFTSSAFSWNDFLLEDAFIPFTNQEQRLGEPNRGCDQTKLLE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01709 249 SMART sant 12 62 IPR001005 -
Gma04g01709 249 SMART sant 65 112 IPR001005 -
Gma04g01709 249 ProSiteProfiles Myb-like domain profile. 61 110 IPR001005 -
Gma04g01709 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 114 IPR017930 -
Gma04g01709 249 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma04g01709 249 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Gma04g01709 249 Pfam Myb-like DNA-binding domain 70 108 IPR001005 -
Gma04g01709 249 CDD SANT 16 59 IPR001005 -
Gma04g01709 249 PANTHER F14D16.11-RELATED 1 234 - -
Gma04g01709 249 Gene3D - 6 66 - -
Gma04g01709 249 Gene3D - 68 129 - -
Gma04g01709 249 PANTHER F14D16.11-RELATED 1 234 - -
Gma04g01709 249 CDD SANT 68 110 IPR001005 -
Gma04g01709 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 59 IPR017930 -
Gma04g01709 249 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01709 Gma-Chr4 46299652 46301025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01709 1 159 MYB Transcription Factor Family AT5G56110 56.522 4.41e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g01709 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01709 K09422 - gmx:102659885 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01709 04 46299652 46301025 Gma04g01709 04 46299652 46301025 ECH
Gma04g01709 04 46299652 46301025 Gma06g01684 06 16830747 16832510 GST