Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01689 ATGGCGGGTGGGAGCGTCTTCTGCTCCACTTCTTCTTCTTCTAATTTAACAACAACCACTCAGCCTCCTCTCGATTCTCTTTTCCTCTCTGCCTCTTCCCCTTTCCTCGGTTCAAGATCTATAGTGAGTTTTGGAGATGTTCAAGGAGGGAAGGGGTGCAATGACTCGTTCTTCAGTTCCTACGATGAGCATGGGGATCATGAGGACATGGACGAGTACTTCCACCAGCCAGAGAAGAAGCGCAGGCTCTCGGTAGAGCAAGTGCGGTTTCTTGAGAAGAGCTTTGATGAGGAGAACAAGCTCGAACCTGAGAGGAAGATTCGGCTAGCCAAGGAACTCGGCTTGCAGCCGAGGCAGGTGGCAAGGCTCACTGAGAAGGTGCTTGGAAGAAAGAAAAATGAGGGGAACTTGGAACAGGCTGAAACCAACGGATTGCAGGAGCCACTGCAGAAGTCTTTGGCTGATTCAGCCTCAGAGGGTGAAGGGTCCAAAGTGTCTATTGGGGCTTGTAAACAGGAGGACATTAATTCAGCCAAGAGTGACATATTTGATTCATCAGAAAGCCCACATTGCACTGATGGAATCCACTCTGCACTTCTAGAGACAGGTGACTCTTCTTATGTGTTTGAACCTGATCAATCTGATGTGTCTCAGGATGAAGAAGATAACCTGAGCAAGACCCTTTTGCCTCATTTCATCTTTCCCAAACTTGAAGATGTTGATTACTCCGACCTGCCTCATGGTTCATGTAATTTTGGAATTCCGGAGGAGGATCAAGCCATTTGGTCTTGGCCTTACTGA 801 0.4806 MAGGSVFCSTSSSSNLTTTTQPPLDSLFLSASSPFLGSRSIVSFGDVQGGKGCNDSFFSSYDEHGDHEDMDEYFHQPEKKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVARLTEKVLGRKKNEGNLEQAETNGLQEPLQKSLADSASEGEGSKVSIGACKQEDINSAKSDIFDSSESPHCTDGIHSALLETGDSSYVFEPDQSDVSQDEEDNLSKTLLPHFIFPKLEDVDYSDLPHGSCNFGIPEEDQAIWSWPY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01689 266 SMART HOX_1 77 132 IPR001356 GO:0003677
Gma04g01689 266 Gene3D - 73 124 - -
Gma04g01689 266 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Gma04g01689 266 MobiDBLite consensus disorder prediction 138 159 - -
Gma04g01689 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 167 266 IPR045224 GO:0003700
Gma04g01689 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 20 125 IPR045224 GO:0003700
Gma04g01689 266 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 167 266 - -
Gma04g01689 266 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 20 125 - -
Gma04g01689 266 MobiDBLite consensus disorder prediction 131 164 - -
Gma04g01689 266 MobiDBLite consensus disorder prediction 203 222 - -
Gma04g01689 266 Pfam Homeodomain 79 120 IPR001356 GO:0003677
Gma04g01689 266 MobiDBLite consensus disorder prediction 1 23 - -
Gma04g01689 266 CDD homeodomain 79 120 IPR001356 GO:0003677
Gma04g01689 266 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01689 Gma-Chr4 45901385 45903324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01689 77 134 Homeobox Transcription Factor Family AT3G01470 65.517 4.87e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma04g01689 Homeodomain 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01689 - - gmx:732618 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01697 06 17092308 17094654 Gma04g01689 04 45901385 45903324 ECH
Gma04g01689 04 45901385 45903324 Gma04g01689 04 45901385 45903324 ECH