Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01682 ATGGAAACTAGCAAGTTCAGTTTGCTATTCTTTTACGTAATTTGTCTTGCTATATTCCCTACCCTTAACGCTAACATAGGTCACTTCGATCATGTCTGGCATAGGCGATTAAAAGAAGCAAGAGAAGCCGCAAAACAAGCTTACAAGCCGAACCCCATGAAAGTTACCGCTGAGTTCAATACACATGTCATCAGGGCAATGAGAGGCTCCAACAACTCAAGAAGGGGCTTATCAAACCAATACGATGGTCCATGCAAGGCGACAAACCCCATTGACAAATGTTGGAGATGTGACCCCAATTGGGAGAAAAACCGCAAGAGGCTAGCAGATTGTGCCCTAGGCTTTGGCCATGGCACAACAGGGGGCAAAGATGGCAAAATTTACGTGGTTAACGACTCTTCCGACAATGACCTCGTAAACCCTAAACCAGGGACATTGAGACATGCTGCAATTCAAAGAGAGCCACTGTGGATCATTTTTGATCGAAACATGAACATTAAACTTCACGCGGAGCTCATGCTAACGGATAATAAGACCATAGATGCACGTGGTGCCAATGTGCACATTAGTGAGGGTGCCCAAATAACGTTGCAATATGTGAAAAACATCATCATTCACGGTCTGCACATTCATGACATTAAGAAATGTAGTGGTGGCCTCATCAGAGACTCCATGGATCACTATGGAGTCCGTGCCATGAGTGATGGGGATGCCATTTCGGTGTTTGGATCCACATATGTTTGGATAGATCATGTTTCCTTTACCAACTGCGATGACGGCCTCATCGATGTCGTTAGCGCTTCAACTGCTGTTACCATCTCCAACTGCCATCTTACCAAACATAACGATGTATTATTATTTGGTGCGAGTGATAGCTACTCGGGGGATAAAATCATGCAAGTGACTTTGGCTTTCAATCATTTCGGGAAAGGATTGATTCAGAGGATGCCAAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACGCATTGGCTAATGTACGCCATAGGTGGTAGCCAACAACCCACCATCATCAGCCAGGGCAACCGGTTTATCGCCCCAAATGACCGAAATGCCAAAGAAGTGACAAAAAGGGACTATGCACCAGAAAGTGTGTGGAAGAACTGGAATTGGAGATCAGAGGGTGATTTATTGATGAATGGAGCCTTCTTTGTTCAGTCTGGGAAAAACGTAGCAAAAAATCCCAAGGCAGAAATCATAGCAAAGCCTGGGAAAGCCGTATCGAGTCTCACTCGCTTTGCAGGTCCTCTAAAATGTGAAGTAAACAAGTCGTGTTGA 1308 0.448 METSKFSLLFFYVICLAIFPTLNANIGHFDHVWHRRLKEAREAAKQAYKPNPMKVTAEFNTHVIRAMRGSNNSRRGLSNQYDGPCKATNPIDKCWRCDPNWEKNRKRLADCALGFGHGTTGGKDGKIYVVNDSSDNDLVNPKPGTLRHAAIQREPLWIIFDRNMNIKLHAELMLTDNKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDIKKCSGGLIRDSMDHYGVRAMSDGDAISVFGSTYVWIDHVSFTNCDDGLIDVVSASTAVTISNCHLTKHNDVLLFGASDSYSGDKIMQVTLAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQQPTIISQGNRFIAPNDRNAKEVTKRDYAPESVWKNWNWRSEGDLLMNGAFFVQSGKNVAKNPKAEIIAKPGKAVSSLTRFAGPLKCEVNKSC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01682 435 PANTHER PECTATE LYASE 18-RELATED 6 435 IPR045032 GO:0030570
Gma04g01682 435 Pfam Pectate lyase 176 354 IPR002022 -
Gma04g01682 435 PANTHER PECTATE LYASE 6 435 - -
Gma04g01682 435 SMART amb_all 163 360 IPR002022 -
Gma04g01682 435 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Gma04g01682 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Gma04g01682 435 Gene3D - 88 428 IPR012334 -
Gma04g01682 435 SUPERFAMILY Pectin lyase-like 89 426 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01682 Gma-Chr4 45839753 45842428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01682 1 435 Polysaccharide Lyase AT5G15110 52.331 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01682 K01728 - gmx:100801864 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00177 19 2144695 2146579 Gma04g01682 04 45839753 45842428 ECH
Gma02g00199 02 1904489 1907206 Gma04g01682 04 45839753 45842428 ECH
Gma08g02790 08 43865484 43869134 Gma04g01682 04 45839753 45842428 ECH
Gma04g01682 04 45839753 45842428 Gma04g01682 04 45839753 45842428 ECH