LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g01680	ATGGAGTTTGGTTCGGAAAGATCTGGTCATGAAGTCAAGGATGAGAAGAGAAGTGAATCTAGTGTTGGAGATGAAGAAGATCGTCGCGAACAAGAGATTATCACGCAGGAGCCACCCCTGTCTACTACAGAAAGATCCACGGTGGAGGTTGGGCCAAATGCTTCTTCCCTGACCAAAAAGGAAGAGGCTGTTGATGAACTTGAAACTGCCAAAGCCGAAATGGGTGAAGTGATGGAAGAAAATCAACGACTAAAGACGTGTTTGAGCCGAATACTAAACGATTACCGCACACTCCAAATGCAATTCCACAACAGAGTTGAACAAGAGACAAAAGACTCTTCTGATCAGAAAGTGAACAACAACAATGACCATCAAAGAGAGGAATCAGACCTAGTTTCCCTCAGTCTTGGAAGACTTCCAACTAGAAACAATGAGAAAGTTAATAATAAACCATTGAAAGAGGAAGAAAAAGAAGATAAAGAAGGCTTGTCCCTTGGATTGGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAGCACTTGCCAAATCAAAGCCCTAATAACAGTGTTGAAGAAGTGCCAAAGGAAGAAGCAGCAGGTGAGAGTTGGCCACAAAGGAAGGGACACAAGACAGCTAGAGATACTACTGGTGAGGATGAAGTTTCTCAACAAAATCCTGCAAAGAAAGCAAGGGTTTGTGTTAGGGCAAGATGTGGCACCGCAACTATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAAATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACGGTTGCACCATCATGCCCCGTAAGAAAGCAGGTGCAAAGATGTGCTCAAGACATGTCCATATTAATGACCACCTACGAAGGTAACCACAACCACCCTCTTCCACTTTCAGCCACAGCCATGGCCTCCACCATTTCAGCAGCTGCTTCCATGCTATTATCCGGCTCATCAACCTCACACTCCGGATCAAGGCCTTCAACAGCCATGACCACCGCCGCTTCCTATCAGACGGTTCCAAATCAAAGCAATACTTACTTGTCCCATCCTGCAGCACTCTCATCTTCACCTTCACACCCCACCATCACTCTAGACCTCACTTCCAATAATAATCCATCCTCATCTTCTGTTCCTCTTGTTAAATTCACTTCGAATTCAACCTTTAATAACCCACAAAGGTACCCTCTTTCCACAAGCCTAAACTTCAGTTACTCAGAATCCAATAATGCAACTTCTTGGAGCAATAATGGGTTCCTCAGCTACAACAACACTCTACCATATAATAGCAATAGAAATGTGACAAATGTCCTTAGCAACATAAACCTTGGAAAACAACAACAACGACCATTGGAAAACATCTACAATTCCTACCTGCAAAGAAACAACAATATTAATCCAATCCCGCCACCACAACATTCTCTACCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCCAATTTTCAATCAGCTTTGGCAGCAGCACTTACAACAATTATTGGCTCTGGAACTGGAAACACTACTCAAGGAAGCCATGGTGCT	1581	0.4358	MEFGSERSGHEVKDEKRSESSVGDEEDRREQEIITQEPPLSTTERSTVEVGPNASSLTKKEEAVDELETAKAEMGEVMEENQRLKTCLSRILNDYRTLQMQFHNRVEQETKDSSDQKVNNNNDHQREESDLVSLSLGRLPTRNNEKVNNKPLKEEEKEDKEGLSLGLDCKFETSKSGSTTEHLPNQSPNNSVEEVPKEEAAGESWPQRKGHKTARDTTGEDEVSQQNPAKKARVCVRARCGTATMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILMTTYEGNHNHPLPLSATAMASTISAAASMLLSGSSTSHSGSRPSTAMTTAASYQTVPNQSNTYLSHPAALSSSPSHPTITLDLTSNNNPSSSSVPLVKFTSNSTFNNPQRYPLSTSLNFSYSESNNATSWSNNGFLSYNNTLPYNSNRNVTNVLSNINLGKQQQRPLENIYNSYLQRNNNINPIPPPQHSLPDTIAAATKVITADPNFQSALAAALTTIIGSGTGNTTQGSHGA	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	196	219	-	-
	Gma04g01680	527	ProSiteProfiles	WRKY domain profile.	240	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	59	80	-	-
	Gma04g01680	527	SUPERFAMILY	WRKY DNA-binding domain	240	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	1	82	-	-
	Gma04g01680	527	Gene3D	WRKY domain	229	307	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	105	231	-	-
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	147	166	-	-
	Gma04g01680	527	SMART	WRKY_cls	245	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	35	54	-	-
	Gma04g01680	527	Pfam	WRKY DNA -binding domain	246	304	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	171	193	-	-
	Gma04g01680	527	PANTHER	WRKY TRANSCRIPTION FACTOR 61-RELATED	20	521	-	-
	Gma04g01680	527	Coils	Coil	53	80	-	-
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	105	131	-	-
	Gma04g01680	527	MobiDBLite	consensus disorder prediction	1	34	-	-
	Gma04g01680	527	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	20	521	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g01680	Gma-Chr4	45770569	45776711	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g01680	74	515	WRKY Transcription Factor Family	AT5G15130	40.685	5.40e-78	252

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma04g01680		WRKY	1.1e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g01680	-		-	gmx:100804403	796.578

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g01704	06	17151477	17156609	Gma04g01680	04	45770569	45776711	ECH
	Gma19g00181	19	2218178	2221556	Gma04g01680	04	45770569	45776711	ECH
	Gma02g00196	02	1870808	1877287	Gma04g01680	04	45770569	45776711	ECH
	Gma01g00390	01	4785070	4790972	Gma04g01680	04	45770569	45776711	ECH
	Gma18g01118	18	16214826	16219400	Gma04g01680	04	45770569	45776711	ECH
	Gma04g01680	04	45770569	45776711	Gma04g01680	04	45770569	45776711	ECH