Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01676 ATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAA 1752 0.4178 MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNKKEAVVSSNELENGLSLDPTPDEIATNEEDHELENEESENILPDNQERDIIGSVDPDAPPDPEKIRLEQAASKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRKQAVVTLCCMYGIVKLQALVRGGRIRQSNDFHEKCNLFKPLDAKLGEPVGISTKISKLTANTFIHKLLASSITIMALQLQYVNGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNVSNGEAQITKSKRTTRKLPIANFETALEQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAGQPEVESETPKQHLEMTKVIPGHAVLEQATITSDDKIKMEETSTISNVPDVEITPIPSVNKEVSEILNNYQVSVESKPLSETPTKDRNTSHDEVKNKLGNLPETIFKDENSLLTNGDLSHSDLTGNENQKPTRKISNLTKQENGEDGIKNSPKLPSYMAATESAKAKLRAQGSPRFGQDGTEKNNTAGGSGRHSLPSSTNNQISSHSPKPQRSVPAGGKGGNKSDRTVPSSKAGNGKVTQAEWRR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01676 583 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Gma04g01676 583 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Gma04g01676 583 Pfam Protein of unknown function (DUF4005) 479 562 IPR025064 -
Gma04g01676 583 PANTHER PROTEIN IQ-DOMAIN 31 1 571 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 515 549 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 291 305 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 411 583 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 445 483 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 39 95 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 245 319 - -
Gma04g01676 583 Gene3D - 96 149 - -
Gma04g01676 583 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Gma04g01676 583 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Gma04g01676 583 SMART iq_5 98 120 IPR000048 GO:0005515
Gma04g01676 583 SMART iq_5 121 142 IPR000048 GO:0005515
Gma04g01676 583 MobiDBLite consensus disorder prediction 418 436 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 55 72 - -
Gma04g01676 583 MobiDBLite consensus disorder prediction 256 289 - -
Gma04g01676 583 PANTHER IQ-DOMAIN 5-RELATED 1 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01676 Gma-Chr4 45580518 45587717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01676 1 583 IQD Protein Family AT1G74690 44.480 9.04e-120 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01676 - - gmx:100814860 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01707 06 17208312 17218562 Gma04g01676 04 45580518 45587717 ECH
Gma02g00190 02 1835633 1840918 Gma04g01676 04 45580518 45587717 ECH
Gma01g00396 01 4848928 4853865 Gma04g01676 04 45580518 45587717 ECH
Gma08g02796 08 43947319 43952431 Gma04g01676 04 45580518 45587717 ECH
Gma18g01115 18 16136569 16141916 Gma04g01676 04 45580518 45587717 ECH
Gma04g01676 04 45580518 45587717 Gma04g01676 04 45580518 45587717 ECH