Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01671 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGATGACCTAAGCGAGCGTTTATCTGAGCTCTTGGCTACAACTGACACAGCACAAGCTGCAATAATTAGAAATCTACTAATGCAATAG 279 0.4409 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01671 92 Coils Coil 57 77 - -
Gma04g01671 92 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g01671 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Gma04g01671 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Gma04g01671 92 CDD bHLH_AtPRE_like 17 77 - -
Gma04g01671 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Gma04g01671 92 Gene3D - 18 88 IPR036638 GO:0046983
Gma04g01671 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gma04g01671 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01671 Gma-Chr4 45393776 45395428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01671 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 1.39e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma04g01671 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01671 - - gmx:100527636 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01712 06 17282371 17284398 Gma04g01671 04 45393776 45395428 ECH
Gma19g00188 19 2306892 2310132 Gma04g01671 04 45393776 45395428 ECH
Gma02g00181 02 1682233 1683493 Gma04g01671 04 45393776 45395428 ECH
Gma01g00411 01 5058729 5063583 Gma04g01671 04 45393776 45395428 ECH
Gma08g02807 08 44180771 44182345 Gma04g01671 04 45393776 45395428 ECH
Gma18g01105 18 15718302 15718903 Gma04g01671 04 45393776 45395428 ECH
Gma04g01671 04 45393776 45395428 Gma04g01671 04 45393776 45395428 ECH