Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01646 ATGAAGAAGAGACAGGTGGTGGTGAAAAGTGTGGCCAACACTTCATCTTCAGTGATGAGAAACATAAGATATGGTGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGCAGGGAATTCATGGCTAGTACAGGGGAAGGTGCTGGTGGGGCACTTACATGTGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGAATACTGAAGTAGTTTGTGTTTGA 246 0.4593 MKKRQVVVKSVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALTCAACGCHRNFHRREVNTEVVCV 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01646 81 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
Gma04g01646 81 PANTHER MINI ZINC FINGER PROTEIN 3 4 80 - -
Gma04g01646 81 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 80 - -
Gma04g01646 81 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Gma04g01646 81 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01646 Gma-Chr4 44689868 44693436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01646 1 80 Zinc finger-homeobox gene family AT1G18835 74.390 9.16e-36 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma04g01646 ZF-HD_dimer 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01646 - - gmx:100785967 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01646 04 44689868 44693436 Gma06g01741 06 17675492 17677267 GST