Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01622 ATGGGAAGGACTCCTTGCTGCAGTCACGAGGAATTGAGAAAAGGGGCATGGACGGTTCAAGAAGACCAGAAACTAATTACTTACATTCAGAAACATGGCACAGGAAGCTGGCGTACCTTGCCACAGAAAGCAGGTCTTAAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTTAGACCTGACATTAAGAGAGGGAAATTAAGCCAAGAAGAAGAGCAGACAATTATCAAACTTCGGGCGGTTCTTGGAAACAGGTGGTCAAGTATTGCAAAGCACTTACCCATGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAAGCAGTTCGAAAAGAATGCTGTGGATCCCTCAAGTTCAAAACCAAATAGCACTGATAGTTCCTCAGAATCGAAATCTAATGACACGTGCATGGTTCCATCAGAGAAAACTGATTGCCATGAACCAAACACCAGCCAATCTCATCAGCACAACTTATCAAGGTCAATCTCATCATCAACTCATCTTCTTAACAAAGTTGCTAGTAAAATTCTGGCATCAGGGTACCTAGAACTAATCAAATCATGCCAACCTGTTGTTGCTGGGAACAGCAAAAGTGAAAGTGTGGTTAAAACTGGTATTGGGTTAGAAAGTGACAATATTAGAGACCCCCTTGAGCCTAATTTGACCTCACCAAGTCATTCTATAACTTCTGCTAAGTTACTGAACAAGATGGCTACTTCCCTCCCTCATAAAGTTCATGGCCTTGAAGCTGCAAAAGCTGTGTTCTCAAAACTGATGGAAAACAGTGAAAAAGGTGCCACTGCTAGTGATGATAGCTTTGTTGGAGGTTGTTTAAATGCTTTAAGCCCTTTTGAGGATAAACCACACATAACAAAAACAATTGACTCCCCTTCTGGTCCTACACTAATGTTCAACCATGTTACCACACCCTCATGCTTTTCAGAAGATAATGAAGATAACTGGCAATGCGTTTCATCTAACTATGTTTCCTTCAAAATTTGTGCTGCGAATGGTGGTGACTGCAGTGTCTCTGAGATCAACTTGGGTGAGTCTTCCAGTTCCACATCCAGCTTCCTGTTTGAGAATGCTGACCTTGGAACGTGTGATGATGAGATAAGCAAGTACATCCAGTATTTGTAG 1161 0.4169 MGRTPCCSHEELRKGAWTVQEDQKLITYIQKHGTGSWRTLPQKAGLKRCGKSCRLRWFNYLRPDIKRGKLSQEEEQTIIKLRAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKKQFEKNAVDPSSSKPNSTDSSSESKSNDTCMVPSEKTDCHEPNTSQSHQHNLSRSISSSTHLLNKVASKILASGYLELIKSCQPVVAGNSKSESVVKTGIGLESDNIRDPLEPNLTSPSHSITSAKLLNKMATSLPHKVHGLEAAKAVFSKLMENSEKGATASDDSFVGGCLNALSPFEDKPHITKTIDSPSGPTLMFNHVTTPSCFSEDNEDNWQCVSSNYVSFKICAANGGDCSVSEINLGESSSSTSSFLFENADLGTCDDEISKYIQYL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01622 386 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma04g01622 386 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma04g01622 386 SMART sant 13 63 IPR001005 -
Gma04g01622 386 SMART sant 66 114 IPR001005 -
Gma04g01622 386 CDD SANT 16 61 IPR001005 -
Gma04g01622 386 Gene3D - 69 144 - -
Gma04g01622 386 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma04g01622 386 PANTHER TRANSCRIPTION FACTOR MYB51 1 248 - -
Gma04g01622 386 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma04g01622 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma04g01622 386 Gene3D - 14 66 - -
Gma04g01622 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma04g01622 386 CDD SANT 71 112 IPR001005 -
Gma04g01622 386 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma04g01622 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Gma04g01622 386 MobiDBLite consensus disorder prediction 119 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01622 Gma-Chr4 44127239 44129549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01622 1 145 MYB Transcription Factor Family AT5G15310 64.384 6.10e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g01622 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01622 K09422 - gmx:100775267 749.199