Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01610 ATGGCTTCTTCTCTTTCCCCTTCTCCCTCTTCCCTCGACCAAACCCTTCGCGACGTCGACGACTACGTTCTGGAAAATGGGTCAGAAGGTTTGTCAAGGGACACACTTCATTATGTGTACGAGCTTGTGAAGAATGGGAATGTGGCATTTCGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCACAGAACACCATCATCTTCAGAACGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGCAAAATCATATCTTTTAAAGGCCAATGCTTTTCTACTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGTGTTTCATCTAGTTCAAGAGGGATGAGTACACATGGACATCCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCGTGTGGACATTCTTTTTGCTGTTCGTGTCTATTTCAGTCAATGGATCGTGGAAACAAATGCCCATTGTGCAGGACTGTTCTGTTTATTAGTCCTAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAATTTCCCAGAGGAATATGCTGAAAGGAAGCAAGAGCACGACAGTTTAATCAAAGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCACTCAATATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGTATCATCCATTCCTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAAGATATTATGCCACCAGAAGGGACAAGTGAAAGAGATACTTTACAGCAACAGACATATAATGCAGTCGAAGATGCTAGATCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAAACTTGAGAGACTCGCCAGTGTTGAAGTAATGATGCCCTCACCAAAAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACTCTTTCCAATCGGAGGCCTGCGGAAAGATTGGATCTCCTACGCATAAGAGACACTGCCGAGAGGATTAGACGGGGCCTGATATTTCTCCGCCAGGAGGAACAAGGGTGCAGAATTCAGTAA 1461 0.4257 MASSLSPSPSSLDQTLRDVDDYVLENGSEGLSRDTLHYVYELVKNGNVAFRENRMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFMHRTPSSSERRPLSGLEPTTLAELGLKDAEKLVELQSNSAKSYLLKANAFLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLESVSSSSRGMSTHGHPERNDDFDCTLCLKLLYEPVTTPCGHSFCCSCLFQSMDRGNKCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDSLIKAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIHSWDQDGYRVAEVEWIQDIMPPEGTSERDTLQQQTYNAVEDARSWIARAKEAARHDQRKLERLASVEVMMPSPKDPERFSFWLATLSNRRPAERLDLLRIRDTAERIRRGLIFLRQEEQGCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01610 486 Gene3D - 410 478 - -
Gma04g01610 486 SMART tpr_5 39 72 IPR019734 GO:0005515
Gma04g01610 486 SMART tpr_5 130 163 IPR019734 GO:0005515
Gma04g01610 486 Gene3D Tetratricopeptide repeat domain 37 187 IPR011990 GO:0005515
Gma04g01610 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 277 IPR013083 -
Gma04g01610 486 SUPERFAMILY RING/U-box 191 260 - -
Gma04g01610 486 Gene3D - 279 380 IPR046336 -
Gma04g01610 486 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Gma04g01610 486 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 15 478 - -
Gma04g01610 486 SUPERFAMILY PUA domain-like 281 476 IPR015947 -
Gma04g01610 486 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gma04g01610 486 SMART lon_5 280 478 IPR003111 -
Gma04g01610 486 SUPERFAMILY TPR-like 39 168 IPR011990 GO:0005515
Gma04g01610 486 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Gma04g01610 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 477 IPR003111 -
Gma04g01610 486 ProSiteProfiles Lon N-terminal domain profile. 278 478 IPR003111 -
Gma04g01610 486 PANTHER RING FINGER PROTEIN 127 15 478 - -
Gma04g01610 486 SMART ring_2 197 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01610 Gma-Chr4 43821427 43830483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01610 185 238 C3H Transcription Factor Family AT1G74990 35.088 4.67e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01610 - - gmx:100797798 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01610 04 43821427 43830483 Gma04g01610 04 43821427 43830483 ECH