Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01598 ATGACAAAAGTAACCCTAAAGACCTACACACATAATTCGGGCATGGTAATTAGATTACCAGATGTAGCCAATGAAGCATATCCGATTCCCTCTCAAGTCATTTTAGACACCACATGTTCTGTGAGAAATCTGTTTCAGCTGCTCAACGGGACAAATAGATCGAGACCAAATGATTTTGGGATGAGAAAGAAAGAAAGGGAGGTGCCATCATATATGAAACAAGTCGAAGTGGAAGAGGCTAGAAGAATAGATCCTCTCACGTGCAAAACCATCAGAGAGAGAGAGAGAGACTGTAGTAATTTGTTTCTTCTCCCCATGTCGAATTATGACGAGATTTTAGGGCTGATATGGGAAAATGGCCAGCTATCCATGCATGGGCTTGCTGGGCTTCAACCTACTAACCCTACTCAGGAAAAGCCCATATTGAATAGTGCCCACGACACATTGGAGTCTATTGTTCAACATGCCACGTGCCCACGTTATCAACCGTCAAAATTCACTAGGGAAAAAGGCCATGCCCCTACTAGTAATAGAAAGAACAACTCCATTGGTGCACCCGATGGTGGTGAGGTTCAAGGTGTGCCATCGTCGGCAAGGAAAAGAACATGGTCCAATGCTAACAACATGTTGGAAGAATGTGATATCCTCAGTGGTTGTGCTAGTGCTGGTGCCACCTTTTGTAGGGACAATGATACAGCCATGATAACATGGGCTTCTCTTGAATCTGGTCGGAACTTGAAGACCATAGAGGAAGATTCAGCTTGTCACTGTGGATCGGAAATTCGAGACAACCAAGATGACAGAGACAGCAAAGCAGAAGTAGGCCAAAGCAACTCAAAAAGACGAAGTCGAACTGCTGCCATCCACAACCAGTCTGAGCGGAAAAGAAGAGATATGATTAATCAGAAGATGAAAGCCTTGCAGGGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTAGATGAGGTGATAAACTACTTAAAGCAGTTGCAAGCACAGATCCAAATGATGAACAGGACAAGCTTGCCCCAAATGATGGTGCCTTTGGCCATGCAACAGCAGTTTCAGATGTCAATGCTAGCCAGAATGGGTGCTGCTGGGCTTGGCATGGGAATGGGCATGGTGAACATGAACATGGGGAGAtgctag 1158 0.4456 MTKVTLKTYTHNSGMVIRLPDVANEAYPIPSQVILDTTCSVRNLFQLLNGTNRSRPNDFGMRKKEREVPSYMKQVEVEEARRIDPLTCKTIRERERDCSNLFLLPMSNYDEILGLIWENGQLSMHGLAGLQPTNPTQEKPILNSAHDTLESIVQHATCPRYQPSKFTREKGHAPTSNRKNNSIGAPDGGEVQGVPSSARKRTWSNANNMLEECDILSGCASAGATFCRDNDTAMITWASLESGRNLKTIEEDSACHCGSEIRDNQDDRDSKAEVGQSNSKRRSRTAAIHNQSERKRRDMINQKMKALQGLVPNANKTDKASMLDEVINYLKQLQAQIQMMNRTSLPQMMVPLAMQQQFQMSMLARMGAAGLGMGMGMVNMNMGRC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01598 385 PANTHER TRANSCRIPTION FACTOR PIF7 73 381 - -
Gma04g01598 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Gma04g01598 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 342 IPR036638 GO:0046983
Gma04g01598 385 MobiDBLite consensus disorder prediction 163 198 - -
Gma04g01598 385 CDD bHLH_AtPIF_like 284 340 - -
Gma04g01598 385 SMART finulus 290 339 IPR011598 GO:0046983
Gma04g01598 385 Gene3D - 278 344 IPR036638 GO:0046983
Gma04g01598 385 Coils Coil 323 343 - -
Gma04g01598 385 Pfam Helix-loop-helix DNA-binding domain 289 334 IPR011598 GO:0046983
Gma04g01598 385 MobiDBLite consensus disorder prediction 259 295 - -
Gma04g01598 385 MobiDBLite consensus disorder prediction 259 278 - -
Gma04g01598 385 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 73 381 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01598 Gma-Chr4 43399879 43406823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01598 104 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.085 8.82e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma04g01598 HLH 6.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01598 - - gsj:114409686 518.079