Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01558 ATGATTATGATGATGGCAAGTTCAAGAGAAGGTCGTCAAGCAAAGCAAGAGGGTGACACCACTAATATTGACAAGTTCTCCCAGGCATCGTCCACTTCAAGACAATGGTCAGCTTTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTTGGAGGGAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTTCCCACAGCAATTCAGCTATATGATCTTCAAGACAAACTTGGACTAAGCCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCCACCAAATTTGACATTGACAAGCTCCCTCCACTCCAATTCCCTCAGGGTTTTGGTCAATTTCAGCATCCACAAACCCTACTCCCCTTCCATGATTCAAGTGCTGCCTCTCATCAGCTCTCTCTAGGACCCTTCTGTGATGCTAGCTCCACATTTGTGAGGGATGGGGGGATTCAAAACCTCATGGCAAAGTCAAGGTATTGGGAGAACATAGATTCAATGTCAAGATTAAGAGGCAATAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAGTGAGCAAGAGAATCATGATCAAGATGGTGTTGTTGGAGGTTACAACAGCTTGCAAGTTTCTACTCAGAGGCTTTTCCCAATGCGTAGTAGTAGTACTACTACTACTACTACTCACTCCCTTTTACCTGGTTTGTTTAACAATTCCATGCCATATAACTCCTACAACTCTGAGCCTTCTAGTTTGTCTTTATCTCAATTTGGAAGCCATGGATTGTTCCCTACTCAACAAGTAGATCCTAATCCAAGCAGCGGCAACAATGGTGTGCAATTCCAATCTTCTTTTCCATTACCATCATCTGGCTCTCAATTATTTTTTGGGTCATCTTCTGCTACACCATCAATGTTCACCACCTATGCTCCATTTATTGCACCCTCAGTGGACACTGATCCAAGACAGTTCAACCACATTCAGTTCTTGAACTCAGACCCTTCCCAGAAGCACCCTTTAGTTCAAAGCTTTTGGATTCAAACAGCAGCAACCGTAGCCAGGAAAATCATAAGGGTAGCACTTCTTGAATCTCCTCAGTCACCATTGTTCCTTCCAAAGACGTTAGATTGTTGTGGCCCTTAA 1152 0.4349 MIMMMASSREGRQAKQEGDTTNIDKFSQASSTSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFGQFQHPQTLLPFHDSSAASHQLSLGPFCDASSTFVRDGGIQNLMAKSRYWENIDSMSRLRGNKEAEKGKWIKTSEQENHDQDGVVGGYNSLQVSTQRLFPMRSSSTTTTTTHSLLPGLFNNSMPYNSYNSEPSSLSLSQFGSHGLFPTQQVDPNPSSGNNGVQFQSSFPLPSSGSQLFFGSSSATPSMFTTYAPFIAPSVDTDPRQFNHIQFLNSDPSQKHPLVQSFWIQTAATVARKIIRVALLESPQSPLFLPKTLDCCGP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01558 383 Pfam TCP family transcription factor 53 165 IPR017887 -
Gma04g01558 383 ProSiteProfiles TCP domain profile. 53 111 IPR017887 -
Gma04g01558 383 PANTHER TRANSCRIPTION FACTOR TCP17 3 345 - -
Gma04g01558 383 MobiDBLite consensus disorder prediction 264 284 - -
Gma04g01558 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 345 IPR005333 GO:0003700
Gma04g01558 383 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01558 Gma-Chr4 42197830 42199065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01558 37 319 TCP Transcription Factor Family AT5G60970 42.807 4.66e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma04g01558 TCP 6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01558 - - gmx:100788984 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00752 17 6322213 6323751 Gma04g01558 04 42197830 42199065 PCT
Gma05g00192 05 1815307 1816479 Gma04g01558 04 42197830 42199065 PCT
Gma04g01558 04 42197830 42199065 Gma17g00752 17 6322213 6323751 PCT
Gma04g01558 04 42197830 42199065 Gma05g00192 05 1815307 1816479 PCT