Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01550 ATGGCTCGTGTTCCTGATAAGATTAAGTTGATAGATGGATCAAGGGAAACTCTTAAGCTTTCTGTAAGGATCACTGATCTTTGGTTCATTGGGATCCCTGAAAAGTTTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAACAAGATCAGCTAAAGTCTTGGAAGGCTGATTTGAAGGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATGAAGAATGATGGGAAATTCAGAATTTGTGATCATGAATATAAATTATGTTATACTGGAGTTACTGCGGTTAGGCAATGTAATATGGAACACTTACCTTTTAGGAAATTTAGATTTGTTGATTTTTCCACTGTCATTGCTGGTCATTTTGAAACTGGACTCTTGGGTTGTTTCCAAATTAAAGGATTTGAGTTTTTGTCTTATTTGAATGAGGTTGAAGATGAAAGGCCTATTGTTATTCTTTTGACACATGCCAGGATCAAGGAAGCCCAGGGATCATATCTGTCGTCAGTCAGTAATTCTTTCAGGGCGTCTAAACTCATGATCAATGAGCTTGTGCTGGAAATCCAAGAATTCAGAGAGAGGTATTTTGACAATGTTTCACAGGTTTCAGGGTCATCTCAATTATCATCAAAAGATGTGTTTCTGTCAAAGGCTAAAGCAAAAAATATCTCTCAGATTAATGCCATTTCTGAGGAAATTGTTTGTGTTACTGTCGCCAAGATTACAACTATAGTGATGGACAACCATTCATGGTGTCATCCGGCTTGCAGTCAATGTCACAAAAAAGCTGACATAGAAACTATGTCATTCACATGTCCATGTGGCAAAGACAACGACCAACCTATATTAAGGTATAGAGTTGAAGTAATGGTTAATCACAAGGGCGAACAAACCAAATTTTTGCTCTGGGACCGTGAATGTGCAGAGTTAATTGGTCAATCGGCAGATGAAGTCAACAGGCTCAAAATAGAAGATGGCGATGTTGATTTAAATGCCTCTCCTCAGGCACTAGATACGCTATTGGGTTGTTTCCTTGCATTCAAAGTCAAGGTACAACTAAGGTTCAGGAATGTTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATGTTGTGCAGGATATGCTTCCCGATACTGAGCAATCTGTGTCTGTTACCATTGATGATGATCATTCAATGCTTGACTCGACTGAGCCTACAGAGCTTGAATCTATAAGCTACCGTTGTCCTTGTCAATCTGTCTCTGTTACCGCCGATCATGACCCTCTTCTCAAGATTCCATTGACACCAACTAAGTGTGTATCTTCTGATGAGTTGGATGATGGACCCAAAAACTTTTAG 1368 0.3845 MARVPDKIKLIDGSRETLKLSVRITDLWFIGIPEKFEQAEMVVVDSDGDEIHVVCKQDQLKSWKADLKENLTYVMHNFKVMKNDGKFRICDHEYKLCYTGVTAVRQCNMEHLPFRKFRFVDFSTVIAGHFETGLLGCFQIKGFEFLSYLNEVEDERPIVILLTHARIKEAQGSYLSSVSNSFRASKLMINELVLEIQEFRERYFDNVSQVSGSSQLSSKDVFLSKAKAKNISQINAISEEIVCVTVAKITTIVMDNHSWCHPACSQCHKKADIETMSFTCPCGKDNDQPILRYRVEVMVNHKGEQTKFLLWDRECAELIGQSADEVNRLKIEDGDVDLNASPQALDTLLGCFLAFKVKVQLRFRNVVVLKYSDESDLINVVQDMLPDTEQSVSVTIDDDHSMLDSTEPTELESISYRCPCQSVSVTADHDPLLKIPLTPTKCVSSDELDDGPKNF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01550 455 Pfam Replication factor-A C terminal domain 247 334 IPR013955 -
Gma04g01550 455 Gene3D - 143 210 IPR012340 -
Gma04g01550 455 Gene3D - 211 382 IPR012340 -
Gma04g01550 455 PANTHER REPLICATION FACTOR A 1, RFA1 11 312 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma04g01550 455 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 11 312 - -
Gma04g01550 455 SUPERFAMILY Nucleic acid-binding proteins 20 107 IPR012340 -
Gma04g01550 455 CDD RPA1_DBD_C 225 371 IPR013955 -
Gma04g01550 455 Pfam Domain of unknown function DUF223 40 132 IPR003871 -
Gma04g01550 455 Gene3D - 6 107 IPR012340 -
Gma04g01550 455 CDD RPA1_DBD_A_like 19 104 - -
Gma04g01550 455 SUPERFAMILY Nucleic acid-binding proteins 231 365 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01550 Gma-Chr4 41988150 41999838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01550 105 337 Core DNA Replication Machinery Family AT5G61000 25.301 9.77e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01550 - - gmx:102668313 657.136