Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01545 ATGAAACATACCATGTTACCTGCCATTGGATCTGTTGTCCCTCGTGGTGCCTTTGCAGCAGTCTTGCTCCTGTTACTGTTTTCTTTCTCCACTTTCTCTTCTACAGAAGCCTATGATCCGCTTGATCCAACCGGAAATATAACAATCAAATGGGATGTCATTAGCTGGACCCCAGATGGCTATGTTGCTGTTGTGACAATGTACAACTTTCAACAATATCGCCACATTCAGGCCCCCGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAGCATGATGGGAGCGCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCTACAGTTGTGGATTTGCTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACGCCAGCACTGCAGTAAGTTCTTTCCAGGTTAGTGTTGGTTCTGCCGGAACAACAAATAGAACGGTCAAAATGCCTAAAAATTTCACCCTCAAAGCACCGGGACCTGGCTATACTTGTGGTCCTGCCAAAGTTGGAAAACCAACTGTATTTATTACCAATGACAAGAGGAGAACCACTCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGCTGTGTTTCCCTCTCATCCTTCTATAATGACACCGTTGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGATCCAAATTCCCCACATTTAGATTCAGTTGTATCATCATCTGGCAAAGCTGCAAACACGCCTCTAGTCCAGTGTACAAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTGAAGCTAAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTATTCACAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGATCTCTTGGTAATGTTCAGTCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCTAGAAGGATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCCTGGCTTCCAAATGCAAGTTCTAAACTAGTTTTCTCTTTACTAAGTACAGTCATAGTCACTTTAGCTTCTTTGTTAATCTTATTGAATCAATCATAG 1371 0.4282 MKHTMLPAIGSVVPRGAFAAVLLLLLFSFSTFSSTEAYDPLDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWSMMGAQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDASTAVSSFQVSVGSAGTTNRTVKMPKNFTLKAPGPGYTCGPAKVGKPTVFITNDKRRTTQAMMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCRNKTEPGSCVDPNSPHLDSVVSSSGKAANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNLDNITQLFSFNYKSLTPYEGLNDTSMLWGVKFYNDFLSSAGSLGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVIVTLASLLILLNQS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01545 456 PANTHER COBRA-LIKE PROTEIN 14 453 - -
Gma04g01545 456 PANTHER PROTEIN COBRA 14 453 IPR006918 GO:0010215|GO:0031225
Gma04g01545 456 PIRSF COBRA 10 455 IPR006918 GO:0010215|GO:0031225
Gma04g01545 456 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01545 Gma-Chr4 41850125 41853331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01545 20 450 COBRA Gene Family AT3G02210 72.979 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01545 - - gmx:100815779 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01545 04 41850125 41853331 Gma04g01545 04 41850125 41853331 ECH
Gma17g00759 17 6394406 6397635 Gma04g01545 04 41850125 41853331 PCT
Gma04g01545 04 41850125 41853331 Gma17g00759 17 6394406 6397635 PCT