Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01540 ATGGAGTCTTGGAGCTATGTTGCTGAGGAGAAAGGGTATGTCTCCAGTGAGGCACTATCACCTCCCAACACACTTGAGAGAAGCAAAGGTTCCTGTTTTGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGGTTTGGGCCAGCAAAACGTTGAGGATCAAGGTTTTGGGGAGTTGGGTTTTCCAGGAATGTTGGGGAAGCAGTTGTGCGGTGATGATCCTAATCCTATTGGTGCTGTTCAGAGCAGAAAGGTGGATGATGTTGTTGTTGACTGCAGAATCACTAGTCCTAGTCCTGTTGTGGCTGCCCCAAATGGATTTTCTTCAAGGGAGGACTTCAATTCCAAGCTTTCAAACGCTCTGGTGGACTCTAATGGTGGAAATTCACTCATTGATTTGAAGCTGGGTTGGTTTGCTGACCATGGAGATGCCATGGTTCCAACATTTTCCAAGGGAGCCCCCATTTTGTCTTCTTCCGAGTTGTCGACGCCACCAAAGAGGGTGAGAGCTTCGGGGGCGCATTCTCAGACTGCTTACTGCCTAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCACAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGCTGATAGCAGATTCCAGGAGACCATGCTAACATCGTCTTTTATCTGCCAAGAGATACTCCCCAGTGGAGTCTTGTCTTCTGAGAAATATGGAGCAAGTGACATGTGGAGACCTATCAAAGCTGAAGACAGCACCGGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTATTACCAATGGACATCCTCAGTCACGATCTTTATTTCCTTCGTATAGTGGAAAACAACTTCCATTTCTTCATGAAAATGGTGCTACATCTGCCACAGGAAACATCTTCTCTGAAAACAATAACCAATATAATCCTCCTTCCCTCGGTGGCCAAAGTTCCGGGTCACAATCACTATTCCAGGACAGCTCCTTAGGAAGGGAGGACTTCAATGTTTTCGACACAGAATCAGCTGTTCAAGGACTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCGGGCCAATCATCAGGGATTCCCATTGCTCACCCGATGGTTATTCCAAGCAGCCACAGCCATTACAACATGAGTCGGGTTTCTGAAAAGATGATAGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGATAGGTTTCCACCTGAATTCAATCCTGTAGATGGAAGTCATCTTAGTCCCATATTGATATCAGATAATAATGAAATCATCAATTTTGAAATGGCAAATGGGATCTTCCAAGGGTCGGATTTCGTGAACGTGAAAGATCGCCTTTCCTGTGAAGACAGCCTCACCATTGACTTGCTTCAACTATCGTCGCAACTTCAGCGTGTCGAGAATCAGAGGCTGTCCTTGCAGTTTAAAGAGGAACCACTTGTGCTTGTGTGCAACATGTTGTGA 1692 0.4551 MESWSYVAEEKGYVSSEALSPPNTLERSKGSCFGWELKTPCSFSNDMLGLGQQNVEDQGFGELGFPGMLGKQLCGDDPNPIGAVQSRKVDDVVVDCRITSPSPVVAAPNGFSSREDFNSKLSNALVDSNGGNSLIDLKLGWFADHGDAMVPTFSKGAPILSSSELSTPPKRVRASGAHSQTAYCLVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYADSRFQETMLTSSFICQEILPSGVLSSEKYGASDMWRPIKAEDSTGFTFRPLSSIPITNGHPQSRSLFPSYSGKQLPFLHENGATSATGNIFSENNNQYNPPSLGGQSSGSQSLFQDSSLGREDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSGQSSGIPIAHPMVIPSSHSHYNMSRVSEKMIGISSQASSGVSDRFPPEFNPVDGSHLSPILISDNNEIINFEMANGIFQGSDFVNVKDRLSCEDSLTIDLLQLSSQLQRVENQRLSLQFKEEPLVLVCNML 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01540 563 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 554 IPR044817 GO:0003677
Gma04g01540 563 PANTHER 1 PROTEIN, PUTATIVE-RELATED 43 554 - -
Gma04g01540 563 SUPERFAMILY SBT domain 182 262 IPR036893 GO:0003677|GO:0005634
Gma04g01540 563 Pfam SBP domain 184 257 IPR004333 GO:0003677
Gma04g01540 563 Gene3D - 174 245 IPR036893 GO:0003677|GO:0005634
Gma04g01540 563 Coils Coil 525 545 - -
Gma04g01540 563 MobiDBLite consensus disorder prediction 361 390 - -
Gma04g01540 563 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01540 Gma-Chr4 41767950 41771888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01540 135 362 SBP-box Gene Family AT1G69170 44.628 7.88e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma04g01540 SBP 2.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01849 06 19754236 19756495 Gma04g01540 04 41767950 41771888 ECH
Gma04g01540 04 41767950 41771888 Gma04g01540 04 41767950 41771888 ECH