Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01535 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCATTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCCTGTATGGAAAAAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGCAAGTGATCAACCACTAACTGAAAATTGGACTCTGGAACATGCAAAGCTGAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGAGGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGAAAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTGATGTATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACTCTCGCTAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACAGGCACAACTGGAGCGACTTGGTGATGAAGTGGATCTGACTTCCTCTGCCCTTGTTCCCCAACCACTGGTGACATCAAACATTAGAACCTCCTCACAAATCAGAGGTGAAGGAGATAACGAAGGAACCCCAACTCCAACCCAAGCTAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 735 0.4408 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVHCDAEVALIVFSTKGKLFEYSSDPCMEKILERYERYSYAERQLVASDQPLTENWTLEHAKLKARLEVLQKNQRNFMGQDLEGLSIKELQNLEHQLESALKHIRSRKNQLMYESISELHKKDKALQEQNNTLAKKIKEKEKALAQQAQLERLGDEVDLTSSALVPQPLVTSNIRTSSQIRGEGDNEGTPTPTQANAILPPWMLRPTNE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01535 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma04g01535 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Gma04g01535 244 Coils Coil 158 188 - -
Gma04g01535 244 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gma04g01535 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gma04g01535 244 Coils Coil 88 108 - -
Gma04g01535 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gma04g01535 244 MobiDBLite consensus disorder prediction 209 244 - -
Gma04g01535 244 MobiDBLite consensus disorder prediction 209 231 - -
Gma04g01535 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma04g01535 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma04g01535 244 Coils Coil 122 145 - -
Gma04g01535 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01535 Gma-Chr4 41468899 41478604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01535 1 203 MADS-box Gene Family AT1G26310 65.534 1.98e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma04g01535 K-box 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01535 K09264 - gmx:100784742 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01850 06 19867125 19873576 Gma04g01535 04 41468899 41478604 ECH
Gma04g01535 04 41468899 41478604 Gma04g01535 04 41468899 41478604 ECH
Gma17g00766 17 6450692 6459495 Gma04g01535 04 41468899 41478604 PCT
Gma05g00180 05 1676184 1686141 Gma04g01535 04 41468899 41478604 PCT
Gma04g01535 04 41468899 41478604 Gma17g00766 17 6450692 6459495 PCT
Gma04g01535 04 41468899 41478604 Gma05g00180 05 1676184 1686141 PCT