Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01524 ATGTTAGGAGGGTCTATTCTCGGATTGAAGTTTCTAGATCCCCTTGCTGAACTTCTCGTCTCAGGCATGATTTTGAAAGCTGGAGCTGAAACAGAAGATGAAACTTCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGAAACTCATCCACAACTAATTTTGATGACAATGACCCTAGGAATGAGTGTGTCATATGCATGACTGAACCAAAGGATACTACTGTTTTACCTTGTCGACATATGTGTATGCGCAATGAGTGTGCAAATGCTCTTCAACATCAATTCAATAAATGCCCTAAATGCCGACAACCTATTGAGGAACTTATTGAGATCAAGATGAACAATGGTGATCAATGA 372 0.4032 MLGGSILGLKFLDPLAELLVSGMILKAGAETEDETSGDSLLDASPHMQITQGNSSTTNFDDNDPRNECVICMTEPKDTTVLPCRHMCMRNECANALQHQFNKCPKCRQPIEELIEIKMNNGDQ 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01524 123 PANTHER MAHOGUNIN 52 122 IPR045194 GO:0061630
Gma04g01524 123 Pfam Zinc finger, C3HC4 type (RING finger) 65 112 - -
Gma04g01524 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 118 IPR013083 -
Gma04g01524 123 MobiDBLite consensus disorder prediction 41 63 - -
Gma04g01524 123 ProSiteProfiles Zinc finger RING-type profile. 68 107 IPR001841 -
Gma04g01524 123 SUPERFAMILY RING/U-box 67 113 - -
Gma04g01524 123 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 52 122 - -
Gma04g01524 123 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01524 Gma-Chr4 41045225 41046854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01524 50 123 C3H Transcription Factor Family AT3G06140 62.162 4.66e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01524 - - gmx:102660432 203.756