Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01486 ATGACCACAATTTTCAAGATGACACGTAAACACCAATTAATCACGATTAGTGAGGGAGTGAGAATCCCTCTTCCAAATCTGACACTACAAAATATTCACCAATTCCCAGTTCCGTGGACTGCAGCACCCTTAGATTTCGTTACCAAGGAGAAGGAGAAGCGCCCGAAGCGCAATAAAATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAA 489 0.4131 MTTIFKMTRKHQLITISEGVRIPLPNLTLQNIHQFPVPWTAAPLDFVTKEKEKRPKRNKMDMYIRVKRSKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPVTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01486 162 ProSiteProfiles Ubiquitin domain profile. 60 138 IPR000626 GO:0005515
Gma04g01486 162 PANTHER OS03G0364000 PROTEIN 60 159 - -
Gma04g01486 162 SUPERFAMILY Ubiquitin-like 60 138 IPR029071 -
Gma04g01486 162 SMART ubq_7 62 134 IPR000626 GO:0005515
Gma04g01486 162 CDD Ubl_ubiquitin_like 64 131 - -
Gma04g01486 162 Pfam Ubiquitin family 64 135 IPR000626 GO:0005515
Gma04g01486 162 Gene3D - 60 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01486 Gma-Chr4 38209524 38218924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01486 60 134 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 6.88e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01486 K03873 - gmx:100499885 208.379