Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01482 ATGGCGAAGCAGCAAACACACAAAATCAATGCAAGCACTAACAATAACATTAGCACAACTAACACTGTCACCGCCAAGGTGAAACGAACAAGGAGAAGCGTCCCTAGAGATTCCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACTGGCCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGGTGCTTATGACGATGAAGAGGCGGCAGCACATGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCGACCTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTAGGGAAGAGTATATTGGATCACTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTACGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGAGTCAACGCTGTGACCAATTTCGACCTCAGCCGCTATATCAAGTGGCTTAAGCCCAATAATAACAACACCACAGTCAACTCTAATCTTATTGACTCTAACCCTAATTGTGAGACGAACTTTACCTCAAACTCTAATCAACAACAAGGATTCAATTTTTTCAACAGACAAGAGTCATTCAATAATGAAGAAGCGGCAATGACTCAGCCTCGGCCAGCTGTTGCCACGTCAGCCCTAGGACTTTTGCTTCAGTCATCCAAGTTTAAGGAAATGATGGAGATGACTTCTGCTACAGATTTGTCAACACCGCCGTCGGAGTCTGAGTTGCCGTCATGCACATTTCCCGATGACATTCAAACATATTTTGAGTGTGAAGATTCCCATAGATATGGAGAAGGGGATGATATTATGTTCAGCGTGCTCAACGGCTTTGTGCCCCCTATGTTCCATTGTGATGACTTTTGA 1044 0.4464 MAKQQTHKINASTNNNISTTNTVTAKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGVNAVTNFDLSRYIKWLKPNNNNTTVNSNLIDSNPNCETNFTSNSNQQQGFNFFNRQESFNNEEAAMTQPRPAVATSALGLLLQSSKFKEMMEMTSATDLSTPPSESELPSCTFPDDIQTYFECEDSHRYGEGDDIMFSVLNGFVPPMFHCDDF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01482 347 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 ProSiteProfiles AP2/ERF domain profile. 45 108 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 334 - -
Gma04g01482 347 SUPERFAMILY DNA-binding domain 44 110 IPR016177 GO:0003677
Gma04g01482 347 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Gma04g01482 347 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 3 334 - -
Gma04g01482 347 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Gma04g01482 347 Gene3D AP2/ERF domain 45 110 IPR036955 GO:0003700|GO:0006355
Gma04g01482 347 Pfam AP2 domain 45 100 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 SMART rav1_2 45 114 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Gma04g01482 347 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01482 Gma-Chr4 38030596 38035133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01482 41 206 AP2-EREBP Transcription Factor Family AT5G57390 71.006 3.13e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma04g01482 AP2 3.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01482 K09285 - gmx:100795869 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00665 17 5669044 5671776 Gma04g01482 04 38030596 38035133 PCT
Gma04g01482 04 38030596 38035133 Gma17g00665 17 5669044 5671776 PCT