Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01474 ATGGAAGCCAGCGCTGGACTGGTCGCTGGGTCACATAACCGCAATGAGCTAGTTGTCATTCATGGCCATGAAGAGCCCAAGGCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGATTTGTTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGAAGCCAGCTTTGCCCACAGTGCAAAACCAGATACAAGCGTCTCAAAGGGAGCCCCCGAGTGGAGGGAGATGATGATGAAGAGGATGTGGATGATATTGAGCATGAATTCAATATTGATGAGCAAACGAACAAGCATGGGCAGGTTGCAGAAGCCATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAACACCTGTCATTGCTGGTGGTCGTTCCAGGCCTGTAAGTGGGGAGTTCCCATTATCATCTAACGTTTATGGGGATCAGATGTTATCTTCTTCACTGCATAAAAGAGTGCATCCATATCCAGTGTCTGAACCTGGAAGTGCaagatgggatgaaaagaaagaagatggatggaaagatagaatggatgACTGGAAATTGCAGCAAGGCAATTTGGGGCCAGAACCCGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGACAACCACTGTCAAGGAAAGTACCAATAGCATCCAGCAAAATCAATCCATATAGAATGGTGATTGTGGCACGTCTTGTTATTCTTGCTTTCTTCCTCAGATATAGACTCATGAACCCAGTACATGATGCACTGGGGCTATGGCTAACCTCTATCATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATAGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTAGCCATGGATTACCCGGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAGTCCTTATCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCCATAGAACCTCGGGCACCTGAGATGTACTTCAGTGAGAAGATTGACTACCTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGCCGAGCTATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGTAGCAGTGGGGGTCTTGATACCGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGCTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCCGTTCTCACAAATGCTCCTTTCATGCTAAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTTTTGATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGTATTGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATTCAAGGTCCTGTATATGTGGGGACTGGATGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCGTGTTTTGGAAGCCGCAAGAAGTATAAGGAGAAGAGTAATGCAAATGGAGAGGCTGCAAGACTAAAAGGGATGGATGATGACAAAGAGGTGCTGATGTCCCAAATGAATTTTGATAAGAAATTTGGACAATCCTCTATTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGACATTCTAACAGGTTTTAAGATGCATTGCCGCGGGTGGAGGTCCATTTATTGTATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGTCTCAACCAGGTTCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTGTGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACGACTGTTTATCCATTCACCTCCATTCCTCTAGTTGCCTATTGTATTCTTCCAGCAGTTTGCTTGCTTACTGACAAATTCATCATGCCACCGATTAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCCTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTGTATCAGCTCACCTCTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACTAACTTTACTGTTACATCCAAGGCAACAGATGATGAAGAGTTTGGAGAATTGTATACCTTTAAGTGGACTACTCTCTTGATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTATCAATCCTGGGGACCACTGTTTGGAAAGCTTTTCTTTTCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTTAAAGGTTTGATGGGTCGACAAAACCGCACACCCACCATTGTAGTGATTTGGTCAGTCCTATTGGCCTCTATTTTCTCCTTACTATGGGTAAGAATTGATCCATTTGTCCTTAAGAATAAGGGACCTGATACCAAGCTGTGTGGAATCAACTGCTAA 3120 0.4397 MEASAGLVAGSHNRNELVVIHGHEEPKALKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDEQTNKHGQVAEAMLHGKMSYGRGPEDDENSQFPTPVIAGGRSRPVSGEFPLSSNVYGDQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKSNANGEAARLKGMDDDKEVLMSQMNFDKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKNKGPDTKLCGINC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01474 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gma04g01474 1039 MobiDBLite consensus disorder prediction 182 201 - -
Gma04g01474 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 852 IPR029044 -
Gma04g01474 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 485 623 IPR029044 -
Gma04g01474 1039 Coils Coil 430 450 - -
Gma04g01474 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Gma04g01474 1039 MobiDBLite consensus disorder prediction 136 165 - -
Gma04g01474 1039 SUPERFAMILY RING/U-box 22 107 - -
Gma04g01474 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gma04g01474 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gma04g01474 1039 Pfam Cellulose synthase 332 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma04g01474 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gma04g01474 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01474 Gma-Chr4 37249115 37253298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01474 1 1039 Cell Wall Biosynthesis AT5G17420 85.879 0.0 1843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01474 K10999 - gmx:100799375 2139.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01474 04 37249115 37253298 Gma06g02046 06 31035002 31040728 GST
Gma17g01129 17 9745594 9749082 Gma04g01474 04 37249115 37253298 PCT