Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01472 ATGAGCCCTCTAATCAGATTCGCCTTAGCAATTAACCTTATTTCCTCTTCCCATACCTTCAGAATGTTCATGAAGTGCTTAGCTCTCCCTCACACCCTTCTAAAATGGACATTACATTCCATTTTCCACCATTTGTGGTATCCCTTATCTTGCACCCTCTTTCGAGAAAAGCTTAGCTCTTGCCATGATCACGTGCCCACCTATGTGTCACGGGAAGATGAAGATTGCGCCGTGTGTCTCTGCAAAATGGGAGAAACAGAAGAAAGGATCATAACGCTGCGGTGTGGACATGTCTTCCACAGAGATTGCTTGAATACTTGGGTTGGTTTCAACAATGCCACTACTTGCCCTCTTTGCAGAGATTCATCGGGAAAAAGGGAATCTGGAAAGTTATTTAGAGCTGAAATTCTGCTATTAGATTCTTGTTCCATCAAAAGATTCAGTTTAGAAAACAACTAG 459 0.4248 MSPLIRFALAINLISSSHTFRMFMKCLALPHTLLKWTLHSIFHHLWYPLSCTLFREKLSSCHDHVPTYVSREDEDCAVCLCKMGETEERIITLRCGHVFHRDCLNTWVGFNNATTCPLCRDSSGKRESGKLFRAEILLLDSCSIKRFSLENN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01472 152 PANTHER RING ZINC FINGER PROTEIN-RELATED 49 123 - -
Gma04g01472 152 Pfam Ring finger domain 75 120 IPR001841 -
Gma04g01472 152 SMART ringv_2 75 120 IPR011016 GO:0008270
Gma04g01472 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 121 IPR013083 -
Gma04g01472 152 SUPERFAMILY RING/U-box 67 123 - -
Gma04g01472 152 PANTHER OS08G0157400 PROTEIN 49 123 - -
Gma04g01472 152 SMART ring_2 76 119 IPR001841 -
Gma04g01472 152 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01472 Gma-Chr4 36986783 36987241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01472 69 129 C3H Transcription Factor Family AT1G80400 40.984 2.66e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01472 - K16282 vvi:104878972 76.6405