Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01471 ATGCTGAAGGAACATGTGGATTGTGCTGTGTGTCTAAGCAAATTTGGAGAAGGAGATGAGGTGATTAGAGTTATGAGATGTGAGCATGTCTTCCACAAAGGTTGTTTGGATAGATGGGTTGGTTTCGAGAATGCCACGTGTCCTCTTTGCAGAGGATCACTGACTCCAAAAAGGCCTATCACTAACTCTGGAGCTGAGGTTGTGCTATTTCAGTTTTGTTCTGTCCAAAAGTGTAATGATGAGACATGGTGGCTACGCTGA 261 0.4406 MLKEHVDCAVCLSKFGEGDEVIRVMRCEHVFHKGCLDRWVGFENATCPLCRGSLTPKRPITNSGAEVVLFQFCSVQKCNDETWWLR 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01471 86 Pfam Ring finger domain 7 51 IPR001841 -
Gma04g01471 86 SMART ring_2 8 50 IPR001841 -
Gma04g01471 86 ProSiteProfiles Zinc finger RING-type profile. 8 51 IPR001841 -
Gma04g01471 86 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 79 - -
Gma04g01471 86 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 3 79 - -
Gma04g01471 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 52 IPR013083 -
Gma04g01471 86 SUPERFAMILY RING/U-box 4 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01471 Gma-Chr4 36918050 36918460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01471 8 56 C3H Transcription Factor Family AT1G63840 54.000 1.98e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01471 K16282 - vvi:104878969 108.997