Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01442 ATGAGGAAGAAAATCATAGATCCCTCCTCCGGGAAGAAGTTCTGCGGCATCCGGCAGCGACCGTGGGGGAAATGGGCGACGGAGATTTGGGATCTGGCGAGAAGAATGTGTCTCTGGTTGGGAACCTATGAAACTGCTGAAGAAGCTATTATGGTTTATGACGATACCATTATTCGTCTTCGTGGCTCTGATGCATTAACAAACTTCATGTTGCCGCAAAGAGATTCTCCGTCTCCACTGTCGGTGGTGGCAGAGACTCCAACGGAGGTTTGTGAAATGAAGGTTGTGGTCACCGAAGAAGCCTTCAACTCCAGCTATGACTCCAGCGAGGATCATTGCCACCACAAACTCTCCTCTCCCACTTTGGTTCTTTAG 375 0.496 MRKKIIDPSSGKKFCGIRQRPWGKWATEIWDLARRMCLWLGTYETAEEAIMVYDDTIIRLRGSDALTNFMLPQRDSPSPLSVVAETPTEVCEMKVVVTEEAFNSSYDSSEDHCHHKLSSPTLVL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01442 124 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 123 - -
Gma04g01442 124 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Gma04g01442 124 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Gma04g01442 124 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 123 - -
Gma04g01442 124 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Gma04g01442 124 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Gma04g01442 124 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Gma04g01442 124 CDD AP2 12 69 IPR001471 GO:0003700|GO:0006355
Gma04g01442 124 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Gma04g01442 124 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01442 Gma-Chr4 35419483 35419857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01442 1 124 AP2-EREBP Transcription Factor Family AT4G27950 44.355 1.47e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g01442 AP2 1.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01442 - - gmx:100807598 175.637