Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01426 ATGGGAGATTCAGCTAAAGTTGTGATAAAACAAGACATGAAGGGAAGAAAGCATAAATATGGGTTTAACAACAATAAACGTGAGAAGAAAGAGAAGAAAAGGGTGGTGGATGATGAAACTGGTGACAAACATCAGCTGGATGAAGTCCTAAGGAGGCAAATTGAAACAAAAAACCGATGCCTCAATCAGAGAAAAATAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAACGGTATTGAGCTACCAAAGAGGCAAGGGAACTGTAGAACAAAGAAATATGGTGGCAACAGTCTTTCAGAGGATGCTGCTACTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTACAGGTAAGAAGGATGCTGCTACTGCTATCTTTAACCTATCTATTTGTCAGGGAAATAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGCCCCACTGATACAATTTTTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATTGGTCAGGCCAAGCCAATTCATATTCTTGTTGAGGTTATACGAACTGGCTCTCCACGCAATCGAGAGAATGCTGCTGCTGTTTTGTGGTCACTATGCACCGGAGATCCACTACAATTAAAACTAGCGAAAGAACATGGTGCAGAGGCAGCACTGCAGGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGATAAAAGCTGGAAGCATATTGGAACTCTTGCAGTGA 822 0.427 MGDSAKVVIKQDMKGRKHKYGFNNNKREKKEKKRVVDDETGDKHQLDEVLRRQIETKNRCLNQRKITCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKRQGNCRTKKYGGNSLSEDAATALIKLLCEGTPTGKKDAATAIFNLSICQGNKARAVKAGIVAPLIQFLKDAGGGMVDEALAIMAILASHHEGRVAIGQAKPIHILVEVIRTGSPRNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKIKAGSILELLQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01426 273 PANTHER U BOX DOMAIN-CONTAINING 121 273 - -
Gma04g01426 273 Gene3D - 107 273 IPR011989 -
Gma04g01426 273 SUPERFAMILY ARM repeat 120 271 IPR016024 -
Gma04g01426 273 MobiDBLite consensus disorder prediction 1 42 - -
Gma04g01426 273 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 61 118 - -
Gma04g01426 273 PANTHER U BOX DOMAIN-CONTAINING 61 118 - -
Gma04g01426 273 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 121 273 - -
Gma04g01426 273 ProSiteProfiles U-box domain profile. 59 100 IPR003613 GO:0004842|GO:0016567
Gma04g01426 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 100 IPR013083 -
Gma04g01426 273 MobiDBLite consensus disorder prediction 9 42 - -
Gma04g01426 273 SUPERFAMILY RING/U-box 59 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01426 Gma-Chr4 34573229 34578486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01426 126 273 U-box Gene Family AT3G54850 69.595 1.23e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01426 - - gmx:106798472 377.481