Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01423 ATGGATGAAAGGAGAGTGAATACAATAGCTGCTATATCGGTGATTGCACTGATTATTCTCATAGTTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGCATTCTTCCTGATTTTTGGTGCTGGTGATACTGTGATTCTTGCAGTCTTTGCTTATGTACTTGTGAGCATAAGTTACAACCGCAGAAGGAGGCTATTGGAGTCACAGTTGAAATCCCAAGGCCAAGAACTTCGCATAGAGTACAGTTTCTTAAGGAAAGTTGCAGGGGTTCCCATTAAATTCAGATACAAGGAGCTTGAGGAAGCCACTGATGGGTTTCAGGCACTGATTGGAAAAGGAGCATCAGCTTCAGTCTTCAAAGGCATTCTCAATGATGGAACTTCGGTCGCCGTGAAACAAATCGATGCAGAGGAAAGAGGGGAGAAGCAGTTTAGATCAGAGGTTGCAGCCATAGCTAGTGTGCATCATGTAAACCTCGTGAGGCTATTGGGCTATTGCAATGCTCCTACAGCACCTAGGTCAAGGATCTTGCACCTCGATGTGAAGCCAGAGAATATACTTTTAGATGAGAATTTCAGAGCGCTTGTTTCGGATTTCGGTCTGGCAAAGCTTATTGGTAAGGATGAGAGCCACAAGGAAGTGTCTGCTATTAGAGGAACAAGAGGGTACTTGGCTCCTGAGTGGCTCTTAGAGAAGGGTATTTCAGATAAGACTGATATATATAGTTATGGGATGGTTCTCTTGGAGATTGTTGGAGGAAGGAAAAACATGTGCTCGGTGGAAGATGAAAGTGCCAAGTCCAAAAGAAAATGGCAGTATTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGAAAATTGATGGAAATTATTGATCATAGGTTGTCGGAATGTGGGGGTGTTGATGAGAGGCAGGTTAGGACACTGGTTTATGTTGCTTTGTGGTCTGTTCAAGAGAAGCCACGATTGAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTGGAGACACCACCAGACACCAGAATGGTTGTTGTTGATTTTCTAAGTGTGGATGAAAGTGCAACAGATAGTAATACCATGCCAAGGTTGGACTTTGTTTCGAATCAAAGAACACAAAGCAATGTGGAGTGTTCTTCTACCTACTCGTACGCTACCACTGTTTTGTCTGGAAGATAG 1191 0.4391 MDERRVNTIAAISVIALIILIVVARVTLKLSKAFFLIFGAGDTVILAVFAYVLVSISYNRRRRLLESQLKSQGQELRIEYSFLRKVAGVPIKFRYKELEEATDGFQALIGKGASASVFKGILNDGTSVAVKQIDAEERGEKQFRSEVAAIASVHHVNLVRLLGYCNAPTAPRSRILHLDVKPENILLDENFRALVSDFGLAKLIGKDESHKEVSAIRGTRGYLAPEWLLEKGISDKTDIYSYGMVLLEIVGGRKNMCSVEDESAKSKRKWQYFPKIVNEKVREGKLMEIIDHRLSECGGVDERQVRTLVYVALWSVQEKPRLRPSMAQVVDMLEGRVRVETPPDTRMVVVDFLSVDESATDSNTMPRLDFVSNQRTQSNVECSSTYSYATTVLSGR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01423 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Gma04g01423 396 Pfam Protein kinase domain 108 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01423 396 Pfam Protein kinase domain 174 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01423 396 Gene3D Phosphorylase Kinase; domain 1 66 172 - -
Gma04g01423 396 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Gma04g01423 396 Gene3D Transferase(Phosphotransferase) domain 1 173 349 - -
Gma04g01423 396 PANTHER RECEPTOR-LIKE KINASE 1 172 - -
Gma04g01423 396 PANTHER RECEPTOR-LIKE KINASE 172 396 - -
Gma04g01423 396 ProSiteProfiles Protein kinase domain profile. 30 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01423 396 SMART serkin_6 103 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01423 396 SUPERFAMILY Protein kinase-like (PK-like) 86 334 IPR011009 -
Gma04g01423 396 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 172 - -
Gma04g01423 396 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 172 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01423 Gma-Chr4 34305780 34307110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01423 1 345 Receptor kinase-like Gene Family AT5G20050 50.249 2.03e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gma04g01423 Pkinase 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01423 - - gmx:100779485 476.092