Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01395 ATGGTGCAAACAAGGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCGGAAATTCGCCACCCTCTTCTCAAGAGGAGGGTGTGGCTAGGCACGTTCGAAACAGCAGAAGAAGCGGCACGAGCTTACGACCAAGCCGCGATATTGATGAGCGGGCGTAACGCGAAAACCAATTTCCCAATACTCCAAACCCCGGAGGGTGACCCAAAGACGACGCTAACACCCATCGATCACGAAACCTCATCATCGTCGACGACCACCTCGAAGGAACTGGAAGAGATTCTTCACGCCAAGCTCCGAAAGTGCGGGAAGCTTCCGTCCCCTTCCATGACCTGCCTGAGGCTCGACCCCGAGAATTCTCACATCGGAGTGTGGCAGAAGCGCGCCGGCCAGCGTTCCGATTCCAACTGGGTCATGATGGTTCCTCCCCTCGGAAAAAAAGGTGGTGCTAATGAAGGAGGTACTGGAGGAGATGCTTCTTGTTCTAACTCCTTTCCGTTCTCCGAGTGCGATCCGACCCCGCAAGTGGCAAGGCAGGAGCTTCTGAGGACGGAGATGGACGAGGAAGAAAGAATTGCGCTGCAAATGATAGAAGAACTCCTCAGCAGGAACTGCCCCACTAGCCCTTCATTCAATAACTTATATTAA 657 0.5373 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPILQTPEGDPKTTLTPIDHETSSSSTTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQRSDSNWVMMVPPLGKKGGANEGGTGGDASCSNSFPFSECDPTPQVARQELLRTEMDEEERIALQMIEELLSRNCPTSPSFNNLY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01395 218 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 215 - -
Gma04g01395 218 MobiDBLite consensus disorder prediction 149 172 - -
Gma04g01395 218 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gma04g01395 218 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 215 - -
Gma04g01395 218 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gma04g01395 218 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gma04g01395 218 MobiDBLite consensus disorder prediction 62 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01395 Gma-Chr4 31451807 31453931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01395 1 207 AP2-EREBP Transcription Factor Family AT1G15360 60.190 1.40e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma04g01395 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01395 - - gmx:100779921 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01395 04 31451807 31453931 Gma06g02006 06 27829240 27831231 GST
Gma17g01076 17 9245148 9246073 Gma04g01395 04 31451807 31453931 PCT
Gma13g01473 13 29454981 29455962 Gma04g01395 04 31451807 31453931 PCT
Gma04g01395 04 31451807 31453931 Gma17g01076 17 9245148 9246073 PCT
Gma04g01395 04 31451807 31453931 Gma13g01473 13 29454981 29455962 PCT