Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01343 ATGGAAGCTTGTACTGGGCTTTTTGCTGGTACCCCAAACAGCAATGAGCTTGTGGTCATTCAAGGACACGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTTTTGGGAGATGAGGATGAAGATGATGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCTACAAGGGAACATGACCCACGGAGATAGTGAAGGGAATTCTAAATCGAAACCAGTAGGTTTAGCAAAGGTAACAGGTGCAAAGTTGGATGACAAGGAGAAAGTAGATGAGTGGATGTTGCACCAAGGCAATCTATGGCCTGAAACTGATGCCTCAGTTGATCCCGAAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTACCAATACCATCCGGCAGACTCAGTCCTTACAGAATGATGGTTGTCGCTAGGCTCCTCCTTCTATTACTGTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTATGGTTCATATCTGTGACATGTGAAATCTGGCTCGCATTATCCTGGATGATTGATCAGCTTCCCAAATGGTTCCCCATTGATCGTGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACCAGAGAACAAGCCCAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAAACATTTTCTGTAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAGATAGATTTTCTAAAAGATAAGCTTCAATCCACTTATGTGAAAGAACGCCGGACTATGAAGAGAGAATATGAGGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACTCCAAAGACCATCCTAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTCCAACACCACAACAAAGCTGGCGCAATCAATGCCATGCTTCGTGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTAAACTTGGATTGCAATCATTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGCCTTTGTACAGTTTCCACTGAGGTTTGACAGCCTCGATAGGAATGATCGTTATGCTAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATATTGGTTCAGCATGTATCTTCAGAAGGAAAGCCTTAACCGGCTTTGATTCTCCAAAGACTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGACGAGAATGGAGAGGAAGCAAGCATAACAGGTGAGGACAAGGAGCTATTGAAGTCAGAGATGAATGATGAAAATAAATTTGGGAAGTCCATACTTTTCATGAATTCTGCATTAGCAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGCACTGCTTAAAGAAGCTATTCATGTCATGAGTTCCAGATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGCTATGGATCCATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTGGTGGTTGGAGGTCTGTATATTGCATGCCAAAGAGAGATCCATTCAGGGGTACAGCTCCAATCAACCTCACTGATAGACTGAACCAGGTGCTAAGATGGGCAGTGGGATCGCTTCAGATCCTATTCAGCAGCCATTGCCCACTTCTATATGGAGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTCATTTATTGTATCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTCATCTTCATTGCGTTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTCATTGGAAGTGTGTCGGCGAACCTCTTTGCCCTTTTGCAAGGCATTATGAGAGCCCTGCCACTTGGTAGAGTCAACACAAACTTCAGCATTGTATCAAAGGCACCGGATGATGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAATCTCATTGGTATTGTGGCTGGCTTCACGGACGCCATAAACAGTGGTGAACATTCTTGGGGAGCTTTGCTAGGGAAACTCTTCTTTTCTTTATGGGTCGTTATCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTTTCCTTGGTTTGGGTCAGAGTTGACCCTTTTGTGTTGAAAACAAAAGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2883 0.4367 MEACTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVLGDEDEDDVDDIEHEFKHEEMLQGNMTHGDSEGNSKSKPVGLAKVTGAKLDDKEKVDEWMLHQGNLWPETDASVDPEKAMKEPLSRKVPIPSGRLSPYRMMVVARLLLLLLFFQYRIFHPVPDAIGLWFISVTCEIWLALSWMIDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKTFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNSKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHNKAGAINAMLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIAFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYIGSACIFRRKALTGFDSPKTSKRPSMVQVHSKQDENGEEASITGEDKELLKSEMNDENKFGKSILFMNSALAEEGGVDPSSSQEALLKEAIHVMSSRYEDRTLWGYEVGLSYGSIAADTLTSLKMHCGGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSSHCPLLYGGRLKGLQRIAYINSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFALLQGIMRALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGALLGKLFFSLWVVIHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01343 960 SUPERFAMILY RING/U-box 21 107 - -
Gma04g01343 960 MobiDBLite consensus disorder prediction 560 589 - -
Gma04g01343 960 Coils Coil 371 391 - -
Gma04g01343 960 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gma04g01343 960 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 262 369 IPR029044 -
Gma04g01343 960 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 415 562 IPR029044 -
Gma04g01343 960 PANTHER CELLULOSE SYNTHASE 1 960 - -
Gma04g01343 960 MobiDBLite consensus disorder prediction 571 589 - -
Gma04g01343 960 Pfam Cellulose synthase 273 571 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma04g01343 960 Pfam Cellulose synthase 574 954 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma04g01343 960 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gma04g01343 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Gma04g01343 960 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 960 - -
Gma04g01343 960 SUPERFAMILY Nucleotide-diphospho-sugar transferases 273 778 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01343 Gma-Chr4 24889546 24894113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01343 1 960 Cell Wall Biosynthesis AT5G17420 63.398 0.0 1336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01343 K10999 - gmx:100777270 1888.23