Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01331 ATGGAGATGTCTGTTCAACATGAAAATTCAGATACCATTGGTGTATCAGGATCAGGATCTTGCCTTTATGATCTCTTATGTTCTGAAACACCAAGTTTGAGTACTCAAGCTCTAAGAGAACGATGGATGTCTTCCGGTCCACAAAAAAGACTAGATAATTTGATGCTTCAAGCTGGGAACAAGTATTGTGCCGACTGTGGATCATTGGAGCCAAAATGGGTGTCTTCAAGTCATGGAGTATTTATTTGCATCAAATGCTCTGGTATACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAGTTCGGTGGAAATACAGTAATTAATATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCATCCATTGAGGAGCGCTCTGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGGATATTGAAGAAAATTTGTCTTGTCCCTTTGTACCATCTCATGCAAGATGTTCATCATATTCCGAGCGTAGTTCCTCGAGCAACAACTTCCCACAAGACAAAAAACATTATGATAAACAAGAAACTAAAAGTCTTATTGGGAGCACATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAGCATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGATTGAATTTATTGGGTTGATCAAGGTGAATGTGGTTAAAGGCACTAACCTTGTTATCCGGGATGTAATGACTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAAAGTAGTTTAAACCCAGTTTGGAACGAAAGCCTAATGTTGTCAATTCCGGATAACATTCCTCTTCTTAAAGTG 912 0.3783 MEMSVQHENSDTIGVSGSGSCLYDLLCSETPSLSTQALRERWMSSGPQKRLDNLMLQAGNKYCADCGSLEPKWVSSSHGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKFGGNTVINMKYEACLPSNIKKPKPNSSIEERSDFIRRKYEFLQFLDIEENLSCPFVPSHARCSSYSERSSSSNNFPQDKKHYDKQETKSLIGSTFRNSWGRKDSEHKSSKKSNSLAGMIEFIGLIKVNVVKGTNLVIRDVMTSDPYVIISLGHQSVKTRVIKSSLNPVWNESLMLSIPDNIPLLKV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01331 304 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 304 IPR044518 GO:0005096|GO:0005543
Gma04g01331 304 Gene3D Arf GTPase activating protein 33 170 IPR038508 -
Gma04g01331 304 MobiDBLite consensus disorder prediction 184 204 - -
Gma04g01331 304 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Gma04g01331 304 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Gma04g01331 304 ProSiteProfiles C2 domain profile. 220 304 IPR000008 -
Gma04g01331 304 Pfam C2 domain 242 298 IPR000008 -
Gma04g01331 304 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 3 304 - -
Gma04g01331 304 Pfam Putative GTPase activating protein for Arf 49 162 IPR001164 GO:0005096
Gma04g01331 304 SMART arf_gap_3 48 170 IPR001164 GO:0005096
Gma04g01331 304 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Gma04g01331 304 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Gma04g01331 304 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Gma04g01331 304 Gene3D C2 domain 223 304 IPR035892 -
Gma04g01331 304 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 239 298 IPR035892 -
Gma04g01331 304 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01331 Gma-Chr4 23743320 23769662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01331 3 272 C2H2 Transcription Factor Family AT3G07940 59.041 3.66e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01331 K12486 - gmx:100804342 595.119