Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01324 ATGAGCGATCACTTGGTGGTGTTCGTTGACTGTCTTGCACGCCCTGTCCCTGTTGATCCAGTGGCGCAGACGACCCAGGTGCCTTTCGAACCATCTCCACCTCCGGCCGTCGTGGATGCTGACGCCGCTGGGAGCTCCGACACCTCACCGTCGGAGGATTGCGACGACGAGGGCGACGACGAGGAGGAGCAGCTGATCCAGATGGCAGAGTGTCATATCTGCCAGGAGGAGGATGGCGTTTCCAACTTGGAGACACCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCATGTATGCTTTTTGCACAATAGTTTTCATATTCCGGTACTTTTTGGTTATTGTAAGAGTCTTGGATGCCCGGGTATAGCTAGGGTGTACCTAGATGGGGACTGGGAAGGCAGTGGCTCCCCAAAATGGTTGTTTGTTTTTTTCCCTTCTATATTAACACTCCCACATTTAATGATTATCGTTCTGCCCCTGGGTATAGGGACAGATTGTAGACCTATCCGTGTTCTTGATTAA 585 0.506 MSDHLVVFVDCLARPVPVDPVAQTTQVPFEPSPPPAVVDADAAGSSDTSPSEDCDDEGDDEEEQLIQMAECHICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHHVCFLHNSFHIPVLFGYCKSLGCPGIARVYLDGDWEGSGSPKWLFVFFPSILTLPHLMIIVLPLGIGTDCRPIRVLD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01324 194 SMART ringv_2 70 117 IPR011016 GO:0008270
Gma04g01324 194 SUPERFAMILY RING/U-box 69 119 - -
Gma04g01324 194 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Gma04g01324 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 126 IPR013083 -
Gma04g01324 194 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 119 IPR033275 -
Gma04g01324 194 CDD RING_CH-C4HC3_MARCH 71 117 - -
Gma04g01324 194 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Gma04g01324 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 119 - -
Gma04g01324 194 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01324 Gma-Chr4 23560232 23561682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01324 71 119 C3H Transcription Factor Family AT2G37950 44.898 7.47e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01324 - - gmx:106798519 221.476