Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01311 ATGGCGCTTCCCTGCTGCAGTCAGTCTGCACTGCAGCACTGCAAGCCTAGGGCTAGCCTTCAGCCTTCACCAAGTCGCCAACACTGTTGGCGTTTTCATGCAAAAGTGGAAGCGCTGCTGGGCAtggcgtttccatggccacgtgccaaactcctgctgaaggcgccatcaacaatggcgcttcccatgcaggAAGAGAGAAAATTTTCTAAATTGTTGTCAGAGCTGATAGTTTTGTCCGATGAGATTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTGCATATTTTTGCTGAGATTGCCATGTTGGTTGAGAAATTTCCACCAATCTTCAATGACTTGAGGGAAAAAAACACTGTTTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCCCAGCCTAGAAGTGTCCACGGACTTCAGAGAAAAGATTGGTACATTGCAAAGACAATTGATGAATGTGAGATTTTCCGGAAGTGCCATGAAACTGACTGGAGAAATAGAAGAGGAAATAGTTAATGTCTCTATCGATGATGTTGTTTTGCAACTTAAGAATGGTAAGGATGAAGAATTTGCGGTTGCACTTTTGAGACTAAAGGAGTTCATGAGGAGTGAAAGACTGGATGGTGGCTTGATTGATGAGGAAGCAACTCTTTCCATTCTTTTCAATCGTCTAGGTTCATGTAAGGCTGACAATAGGTTGACCATCATTCGATTGCTAAGAAGTATTGCTTTAGGAAATGATGAGAAAAAGGAGAAGATGGTAGAAATTGAATTTTTATCGGCAGTGGTGAAGTCACTGACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTGGGGCTGTTGCTAGACCTCTCTGACATTCAGGCAGTTCGACGGCGAATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACCCTGATGCCTCACATGACGCGGCAAAGTTATTGGATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCCGAAGCTGGCTATTTTAGGCCACTGGTACAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCAAAAGCACTTTCTAGGTTGGAGCTCACTGATCACAGCAAACTTTCCCTTGGAGAAGCTGGGGCAATTGAGCCCCTTGCCAATATGTTTAGTACTGGATCTGGAATTGCAGGAACTCTGCTACAACTTCTTTTCTCAGTAACATCTGTGCTCATGACTTTGCGCGAGCCTGCATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAATCCATCCTTGTTAATGATGATGTGGCTCAACAGATGCTTTCACTTTTGAATTTTTCTAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAACATAGCCTCCCATCCTGGTGCATCCAAAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGTTGCTCTTGCCCTTTCTCAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCAATTGCTGTACAGTCTCTCGAAAGATCTAACAGATGAATTGACTGAACATCTTAATGAAACTCATCTTTTCAACATTGTCAATATAATCTCAACATCAACATTAGAGAGTGAAAGGGCTGCGGCTGTCGGCATATTGAGTAATCTTCCTACTAGTAATAAAAAAGTGACAGATATACCAAAGAGAGCAAATTTGCTGCCCATTTTAATATCCATTATGTATTCTAGCACAGGAAGTGATTCATCCACAACAAATAACTTCTTAAACGAGAGTATTGCAAGTGTTATTATTCGCTTCACAATTTTCTCTGACAAGAAACTACAACTTCTTTCAGCCGAACAAGGGGTGATTCTTTTGCTTGTAAAACTGCTCTCAAGTGGTTCACCAATCACAAAATCAAGGGCTGCAATCTCTTTGGCTCAACTATCGCAGAATTCTCTGTCTCTTAGGAAGTCTAGAAAATCAAGGTGGCCATGTGTTCCGCCCTCGGTGAATGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAATTATTGGAAGATACTGAGAGAGAAGTAGTTGAAGCTGCTTTGCATGCCCTCTCAACTCTTTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAAGTTGTCAGGTGTGGAGGCTATTATAAAAAATGTACAAGTTGAGGATGCAAAGGTTCAAGAAAAGGCAATATGGATGTTGGAGAGAATATTCTAG 2304 0.401 MALPCCSQSALQHCKPRASLQPSPSRQHCWRFHAKVEALLGMAFPWPRAKLLLKAPSTMALPMQEERKFSKLLSELIVLSDEIASLAKNSEIEVHIFAEIAMLVEKFPPIFNDLREKNTVLDKPPIRKSLESLENELRPSLEVSTDFREKIGTLQRQLMNVRFSGSAMKLTGEIEEEIVNVSIDDVVLQLKNGKDEEFAVALLRLKEFMRSERLDGGLIDEEATLSILFNRLGSCKADNRLTIIRLLRSIALGNDEKKEKMVEIEFLSAVVKSLTRDSEERKEAVGLLLDLSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASHDAAKLLDILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMAKALSRLELTDHSKLSLGEAGAIEPLANMFSTGSGIAGTLLQLLFSVTSVLMTLREPASAILARIAQSESILVNDDVAQQMLSLLNFSSPIIQGHLLEALNNIASHPGASKVRSKMKEKGALQLLLPFLKENTTKVRSKVLQLLYSLSKDLTDELTEHLNETHLFNIVNIISTSTLESERAAAVGILSNLPTSNKKVTDIPKRANLLPILISIMYSSTGSDSSTTNNFLNESIASVIIRFTIFSDKKLQLLSAEQGVILLLVKLLSSGSPITKSRAAISLAQLSQNSLSLRKSRKSRWPCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDTEREVVEAALHALSTLLQDEIWEGGVNSIAKLSGVEAIIKNVQVEDAKVQEKAIWMLERIF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01311 767 SMART arm_5 254 293 IPR000225 GO:0005515
Gma04g01311 767 SMART arm_5 612 652 IPR000225 GO:0005515
Gma04g01311 767 SMART arm_5 476 516 IPR000225 GO:0005515
Gma04g01311 767 SMART arm_5 684 724 IPR000225 GO:0005515
Gma04g01311 767 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 64 138 - -
Gma04g01311 767 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 141 400 - -
Gma04g01311 767 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 401 767 - -
Gma04g01311 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 64 138 - -
Gma04g01311 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 141 400 - -
Gma04g01311 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 401 767 - -
Gma04g01311 767 Gene3D - 674 767 IPR011989 -
Gma04g01311 767 SUPERFAMILY ARM repeat 184 401 IPR016024 -
Gma04g01311 767 Gene3D - 401 663 IPR011989 -
Gma04g01311 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 695 722 IPR000225 GO:0005515
Gma04g01311 767 SUPERFAMILY ARM repeat 403 767 IPR016024 -
Gma04g01311 767 Pfam Armadillo/beta-catenin-like repeat 690 722 IPR000225 GO:0005515
Gma04g01311 767 Gene3D - 182 400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01311 Gma-Chr4 22629637 22633594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01311 201 767 U-box Gene Family AT1G20780 29.140 3.78e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01311 K08332 - gmx:100791453 1159.05