Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01296 ATGGAGAGCCAAAAAGTGCTTATGCTCATGATGTACACTACTCTCTTTTGCTTCATGGCCACTTTCTCTAGTCAAGACACAGTTACTATTACTCTAAATCAGTCTCTCCAATTTAGTGACACCCTCGTTTCTTTAGACGGAACCTTCGAAGCAGGATTTTTCAACTTTGAAAATTCAAGACATCAATATTTTGGTATATGGTACAAGAGAATATCAGCTAGGACTGTTGTGTGGGTTGCCAACAGAGATGTCCCAGTACAGAACTCAACAGCAGTTTTGAAACTTACTGATCAGGGAAATATCGTTATTCTTGATGGCTCCAGAGGCAGAGTCTGGTCCTCTAACTCATCAAGAATTGCAGTGAAACCAGTTATGCAGCTTTTGAAAACTGGAAACCTTGTTGTGAAAGATGGAGAGGGCACTAAGAACATCTTGTGGCAAAGCTTTGATTATCCTGGCAACACATTCCTCCCTGGAATGAAACTGAAAAGCAATTTAGTTACTGGTCCATATAACTATCTTACATCTTGGAGAGACACTGAAGATCCAGCTCAAGGAGAGTTTTCGTATCGCATTGACATTCGTGGCTTGCCTCAACTGGTTACTGCAAAAGGAGCAACAATTTGGTACAGGGCCGGGTCATGGAATGGCTATCTTTTCACTGGAGTTTCTTGGCAGAGAATGCATAGATTCTTGAATTTCTCTTTTGAGTCCACTGACAAAGAAGTTTCTTATGAATATGAAACATGGAACAGTTCAATACTCACTAGAACTGTGCTCTATCCAACGGGAAGTTCAGAGCGTTCTCTATGGTCAGATGAAAAACAAAGGTGGCTCACTATAGCCACCCGTCCTGTAGACGAGTGTGAATATTATGCAGTTTGTGGTGTTAACTCTAATTGCAACATCAATGATTTTCCAATATGTAAGTGCCTCCAAGGTTTCATACCAAAATTTCAAGCAAAGTGGGATTCGTCAGATTGGTCTGGTGGGTGTGTCAGAAGAATAAAATTAAGTTGTCATGGTGGAGATGGGTTTGTGAAATACTCAGGAATGAAGTTGCCAGACACGTCTTCTTCGTGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTAAAACATTGTGTTTGAGAAACTGCTCTTGTACTGCATATGCAAATTTAGATATCAGAGATGGTGGGAGTGGCTGCTTGCTTTGGTTTGATAACATTGTTGACATGAGAAATCACACAGACCGAGGACAAGAAATTTATATACGACTTGACATTTCTGAACTCTATCAGAGAAGGAATAAGAACATGAACAGAAAGAAGCTTGCAGGGATTCTAGCAGGACTTATTGCATTCGTTATAGGACTAACAATTCTTGTGTGGGCCACTTCCTCATTTATAAAAAGGATGAATCTAGGCAAGCCAGAAATTATAAAAAAGCTAATTCACTGGAAGCACATGAAAGAGACGGAAGAGAATGACATACAAACAATATTTGATTTTTCAACCATTGATATTGCCACAAATCACTTTTCTGACAGAAACAAGTTAGGAGAAGGTGGATTTGGACCGGTATATAAGGGAATATTGGAAGATGGACAAGAGATTGCAGTCAAGAGGCTTTCTAAAACTTCAAGACAAGGAACTGAGGAGTTTAAAAATGAAGTAAAGTTGATGGCAACTCTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTATGAGTTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACAATGCGAGGTAAATTACTAGATTGGACTAGGTGCTTTCAAATTATAGAAGGAATTGCTCGTGGACTTCTGTACCTTCATCAAGATTCTACACTAAGAATCATACATAGAGATCTAAAAACAAGCAATATTCTGCTTGATATCAATATGATTCCAAAGATATCAGATTTTGGTCTAGCTAGAACATTTGGAGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCAGAATATGTAGTGCATGGGTCTTTCTCAACCAAATCTGATGTTTTTAGTTATGGTGTCATCGTACTTGAGATAATTAGTGGGAGGAAGAATCGTGGATTTCGTGACCCTCACCATAATCATCTTAACCTTCTAGGCCATGTATGGAGACTATGGACTGAAGAAAGACCCCTGGAGTTAATAGATGAAATGTTAGATGATGATACGACCATATCTTCAGAAATATTACGGCGTATTCATGTGGGTCTACTGTGTGTACAAGAGAATCCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTGATGTTAAATGGTGGAACGTTACTCCCAAAACCAAGACAGCCTGGGTTCTACACTGGAAAAGATAATACAATTGACACAGGATCTTGTTCAAAGCACCATGAAAGGTGTTCAGTAAATGAAATTTCAATCTCGTTGTTAGAGGCACGATAG 2484 0.3901 MESQKVLMLMMYTTLFCFMATFSSQDTVTITLNQSLQFSDTLVSLDGTFEAGFFNFENSRHQYFGIWYKRISARTVVWVANRDVPVQNSTAVLKLTDQGNIVILDGSRGRVWSSNSSRIAVKPVMQLLKTGNLVVKDGEGTKNILWQSFDYPGNTFLPGMKLKSNLVTGPYNYLTSWRDTEDPAQGEFSYRIDIRGLPQLVTAKGATIWYRAGSWNGYLFTGVSWQRMHRFLNFSFESTDKEVSYEYETWNSSILTRTVLYPTGSSERSLWSDEKQRWLTIATRPVDECEYYAVCGVNSNCNINDFPICKCLQGFIPKFQAKWDSSDWSGGCVRRIKLSCHGGDGFVKYSGMKLPDTSSSWFNKSLSLEECKTLCLRNCSCTAYANLDIRDGGSGCLLWFDNIVDMRNHTDRGQEIYIRLDISELYQRRNKNMNRKKLAGILAGLIAFVIGLTILVWATSSFIKRMNLGKPEIIKKLIHWKHMKETEENDIQTIFDFSTIDIATNHFSDRNKLGEGGFGPVYKGILEDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMRGKLLDWTRCFQIIEGIARGLLYLHQDSTLRIIHRDLKTSNILLDINMIPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYVVHGSFSTKSDVFSYGVIVLEIISGRKNRGFRDPHHNHLNLLGHVWRLWTEERPLELIDEMLDDDTTISSEILRRIHVGLLCVQENPENRPNMSSVVLMLNGGTLLPKPRQPGFYTGKDNTIDTGSCSKHHERCSVNEISISLLEAR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01296 827 Pfam Domain of unknown function (DUF3403) 785 827 IPR021820 GO:0004674
Gma04g01296 827 Gene3D Transferase(Phosphotransferase) domain 1 583 785 - -
Gma04g01296 827 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 826 - -
Gma04g01296 827 Pfam PAN-like domain 340 406 IPR003609 -
Gma04g01296 827 CDD B_lectin 41 152 IPR001480 -
Gma04g01296 827 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Gma04g01296 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Gma04g01296 827 SMART serkin_6 507 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01296 827 CDD PAN_AP_plant 337 420 - -
Gma04g01296 827 SMART blect_4 33 152 IPR001480 -
Gma04g01296 827 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 826 - -
Gma04g01296 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 183 IPR036426 -
Gma04g01296 827 ProSiteProfiles Protein kinase domain profile. 507 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01296 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gma04g01296 827 Pfam D-mannose binding lectin 75 178 IPR001480 -
Gma04g01296 827 SUPERFAMILY Protein kinase-like (PK-like) 488 780 IPR011009 -
Gma04g01296 827 Gene3D - 21 149 IPR036426 -
Gma04g01296 827 Gene3D Phosphorylase Kinase; domain 1 480 582 - -
Gma04g01296 827 Pfam Protein tyrosine and serine/threonine kinase 511 778 IPR001245 GO:0004672|GO:0006468
Gma04g01296 827 Gene3D Hepatocyte Growth Factor 337 419 - -
Gma04g01296 827 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Gma04g01296 827 SMART ntp_6 341 420 IPR003609 -
Gma04g01296 827 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Gma04g01296 827 CDD STKc_IRAK 513 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01296 Gma-Chr4 21838450 21842361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01296 440 795 Receptor kinase-like Gene Family AT4G23190 52.459 2.42e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma04g01296 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01296 - - gmx:100819820 1684.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01296 04 21838450 21842361 Gma11g01701 11 18601133 18605686 GST