Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01261 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTTCTGCTCCAATGCGGGCACGGGTTCTGCAGAGAGTGTCTCTCGAGAATGTTTTCGGCGTCTTCGGACGCCACGCTGGCGTGTCCCAGGTGCCGCCACGTGTCCACCGTCGGAAACTCGGTTCAGGCGCTGAGGAAGAACTACGCGGTGCTCGCGCTACTCCAATCCGCCGCTGCCGCCGCCAACGGCGGCGGTGGAGGGCGGTCGAATTTTGATTGCGACTACACCGACGACGAGGAGGACGGTGACGGCGGTAGAGAGGATGAGGACGAGGAGGACGACGAGAAGCGGCGGCGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCCGGCGGTGGTTGCGCGCCGGTGATCGAGCTCGGCGGCGGCGGCGGCGGCGCGCACAATGACCTGAAGCTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGGGTGGAGATGTGGATGGCGGTGATCGGCGGTGGTGGCGGCGGCGAGGGAGGAGGAAGGCAGCGGTGCCGGCACAACGTGGCGGTGAAGAAGGTGGCGGTGGCGGAGGGGATTGATTTGGATTGGGTGCAGGGGAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGCAGGAATGTGTGCACTTTCCATGGCACAATGAGGGTGGAAGATAGTTTGTGTCTTGTGATGGATAAGTGCTATGGATCGGTTCAGTCTGAGATGCAGCGTAATGAAGGGAGGCTCACTTTGGAACAAGTTCTAAGATATGGAGCGGACATTGCACGAGGGGTTGTTGAGCTTCATGCTGCTGGAGTTGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCACGCTGTGGTTTCTGACTATGGACTTGCTACAATTCTCAAGAAGCCTTCCTGTTGGAAGGCTCGACCGGAGTGTGACTCTGCGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTCAAGAAATCATTGAATTTGTTTTGGGATGATGGAATAGGTATATCTTCTGAATCAGATGCGTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACTGGTGCCATTCCTTGGGCAGGTTTAAGTGCTGAGGAAATCTATCGAGCTGTCGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTTGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTTGCAGTATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAAGGGCTCTGTGTCAAATGTGATGGAGCCTTCCCCAGTACCTGAAATGGAAGTTCCTCAGCAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAATGGCAGCAACTACCTATCGTCGCTATTGGAAGCTCAAAATGCTGATGGTCAAACAGCTCTTCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACAATTCTGGAGTGTAGTGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTCGTATCCTTATCAATAGAAATGCTAATGTGCGGTCACGATTGAGAGATGGTTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGTCAACCAGATTGTATGCGGGAATTACTATTAGCTGGAGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAATCTGACACCGTTGCACCATTGTGTGGCAATATGGAATGTTGCTGTTGTGAAGAGATGGGTGGAAGTTGCTACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAATGAGGGGAGAGAACTGGTGCGGATATTGCTTGCAGCAGGAGCTGATCCATCTGCTCAAGATTCCCAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACTAATGACGTGGACTTGGTTAAGGTTATTTTAGGTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTTGATGCTGGAGCAGATTATAATTTGAAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATCTTGACTGGCTTATTGTTATGCTAATGAAGCCTGATGCTGACATTGAAGTTAGAAACCACAGTGGCAAGACACTACGTGACATTTTAGAGGCTCTCCCCCGAGAATGGTTATCTGAAGATCTGATGGAAGCACTCGTGAATAAGGGAGTTCATTTGTTTCCTACAATATTTAAAGTGGGAGACTGGGTGAAGTTTAAAAGATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAAACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCTAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTTGCAAATGAAGTCATAAAAGTCGTTCCATTGGATAGGGGACAACATGTACACCTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCTGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCGACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCACGTTGCTCCTTTTAGGATTGGGGACCAGGTATGTGTTAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGACGGTCTCTTAATAATAGAGATACCAAATAGACCCATACCATGGCAAGCTGATCCATCAGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCGGTGTCTTCTCCAAAATATGGATGGGAGGATGTTACCAGGACTAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTGTTGCTTTTTGTTTCAGAAGTAAGCCCTTTTCTTGCTCAGTCACTGATATGGAGAAGGTTCCTCCATTTGAGGTGGGCCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATATTGAAAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAACTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGGGTTCCGGGATTTGAAGTTGGGGATTGGGTACGGTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAATATGTTAGGTTCCGAACTGGTTTGGTTGAGCCAAGGTGGGGTTGGAGAGGAGCTGAGCCTGAATCTCATGGGGTTATAACTAGTATTCATGCTGATGGAGAAGTCAGGTTCGCATTTTTTGGTCTGCCAGGATTGTGGAGGGGAGATCCTTCAGACCTTGAGATTGAACAAATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAACTACAATGCAAATAATTGGAAATCAATTGGGCCAGGTAGTGTTGGTGTTGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTAAAACAATATGTAAAGCAACCAAGATTTGGATGGTCAGGGCATACACATGCTAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTCCGGATATATACACCAGCAGGATCCAAAACATGGGTCTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTTAGGGTTAAAGCATCAATTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATAGGGGTGGTGCATCGGATGGAAGACGAGGATCTGTGGGTGTCATTCTGTTTTACGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATGGAATGGGTTAGGCCATTTAAAGTGGGGGACAAGGTAAGGATCAGAGACGGACTGGTGACCCCACGATGGGGATGGGGAATGGAGACACATGCAAGCAAGGGACAGGTTGTAGGGGTAGATGCAAATGGAAAACTGAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGGACTGA 4929 0.4784 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASSDATLACPRCRHVSTVGNSVQALRKNYAVLALLQSAAAAANGGGGGRSNFDCDYTDDEEDGDGGREDEDEEDDEKRRRNSRESQASSSGGGCAPVIELGGGGGGAHNDLKLVRRIGEGRRAGVEMWMAVIGGGGGGEGGGRQRCRHNVAVKKVAVAEGIDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAVFLRHLQEIPRSPPASPDNGLDKGSVSNVMEPSPVPEMEVPQQNPNHLHRLVSEGDTAGVRDLLAKAASENGSNYLSSLLEAQNADGQTALHLACRRGSAELVETILECSEANVDVLDKDGDPPLVFALAAGSPECVRILINRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVILENGGCRSMAILNSKNLTPLHHCVAIWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHENEGRELVRILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILGAGVDVNIRNVHNSIPLHLALARGAKACVGLLLDAGADYNLKDDDGDNAFHIAAETAKMIRENLDWLIVMLMKPDADIEVRNHSGKTLRDILEALPREWLSEDLMEALVNKGVHLFPTIFKVGDWVKFKRSVTTPTHGWQGAKPKSVGFVQSVLDRDNLIVSFCSGEVHVLANEVIKVVPLDRGQHVHLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDQVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDVTRTSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDMEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKILKIDMDGALNVRVTGRQNLWKVSPGDAERVPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAEPESHGVITSIHADGEVRFAFFGLPGLWRGDPSDLEIEQMFEVGEWVRLNYNANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPSSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWVLDPSEVEVVEEKELCIGDWVRVKASISTPTHHWGEVSHSSIGVVHRMEDEDLWVSFCFTERLWLCKAWEMEWVRPFKVGDKVRIRDGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADLALDED 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01261 1642 CDD RING-HC_ScPSH1_like 5 52 - -
Gma04g01261 1642 SMART ring_2 6 51 IPR001841 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat region circular profile. 563 590 - -
Gma04g01261 1642 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1641 - -
Gma04g01261 1642 Pfam Ankyrin repeats (many copies) 601 648 IPR002110 GO:0005515
Gma04g01261 1642 SUPERFAMILY RING/U-box 5 61 - -
Gma04g01261 1642 SUPERFAMILY Protein kinase-like (PK-like) 146 487 IPR011009 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat profile. 529 562 IPR002110 GO:0005515
Gma04g01261 1642 MobiDBLite consensus disorder prediction 94 110 - -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat profile. 598 630 IPR002110 GO:0005515
Gma04g01261 1642 Gene3D - 478 593 IPR036770 -
Gma04g01261 1642 Gene3D - 594 741 IPR036770 -
Gma04g01261 1642 Pfam RING-type zinc-finger 6 49 IPR027370 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat region circular profile. 529 551 - -
Gma04g01261 1642 MobiDBLite consensus disorder prediction 454 487 - -
Gma04g01261 1642 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat region circular profile. 777 809 - -
Gma04g01261 1642 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1641 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gma04g01261 1642 Gene3D Transferase(Phosphotransferase) domain 1 242 463 - -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat profile. 563 595 IPR002110 GO:0005515
Gma04g01261 1642 ProSiteProfiles Protein kinase domain profile. 150 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01261 1642 Pfam Ankyrin repeats (3 copies) 713 808 IPR002110 GO:0005515
Gma04g01261 1642 Pfam Ankyrin repeats (3 copies) 509 591 IPR002110 GO:0005515
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat region circular profile. 744 775 - -
Gma04g01261 1642 SMART ANK_2a 810 845 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 631 662 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 744 773 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 563 592 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 666 697 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 529 559 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 777 806 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 598 627 IPR002110 GO:0005515
Gma04g01261 1642 SMART ANK_2a 704 739 IPR002110 GO:0005515
Gma04g01261 1642 PRINTS Ankyrin repeat signature 530 545 IPR002110 GO:0005515
Gma04g01261 1642 PRINTS Ankyrin repeat signature 726 740 IPR002110 GO:0005515
Gma04g01261 1642 Pfam Protein kinase domain 183 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma04g01261 1642 MobiDBLite consensus disorder prediction 80 134 - -
Gma04g01261 1642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 1518 1637 IPR040847 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 1261 1382 IPR040847 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 1135 1253 IPR040847 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 1388 1509 IPR040847 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 936 1003 IPR040847 -
Gma04g01261 1642 Pfam Mind bomb SH3 repeat domain 1065 1129 IPR040847 -
Gma04g01261 1642 SUPERFAMILY Ankyrin repeat 524 852 IPR036770 -
Gma04g01261 1642 Gene3D - 742 877 IPR036770 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat profile. 744 776 IPR002110 GO:0005515
Gma04g01261 1642 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Gma04g01261 1642 ProSiteProfiles Ankyrin repeat profile. 777 809 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01261 Gma-Chr4 19146603 19176253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01261 221 477 MAP Kinase Kinase Kinase AT1G53570 25.379 3.69e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gma04g01261 Pkinase 2.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01261 K16279 - gmx:100782956 3293.06