Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01244 ATGGAGTATCAAAACCAAAGGGCCAAGGAGGGTAGATTCTGTGAGAAACTCAAGATAAAGAATAAACCAATGTTTGTAGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTTTGGCTTGGAACTTATCAAACTGCTGAGGAAGCTGCGCGAGCTTATGATGAAGATGCATGCCTCCTTCGAGGTTCAAACACTCGCACCAATTTTTATACTCAAGGGTGTGGCATTGCTACAAATTCTAATTTGTTTTCAGCATCCTTTTGGGATTATGATTAG 309 0.4175 MEYQNQRAKEGRFCEKLKIKNKPMFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEDACLLRGSNTRTNFYTQGCGIATNSNLFSASFWDYD 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01244 102 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 CDD AP2 25 80 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 Pfam AP2 domain 25 70 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 83 - -
Gma04g01244 102 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Gma04g01244 102 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Gma04g01244 102 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 14 83 - -
Gma04g01244 102 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01244 Gma-Chr4 18646684 18646992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01244 1 80 AP2-EREBP Transcription Factor Family AT5G19790 70.000 6.02e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma04g01244 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01244 K09286 - gmx:100803832 174.096