Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01218 ATGGCTTTGAGGGTTATAGCAATTTCAGTGGTTTCTACAGTATTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTGTCTTTGGATAAACTTACATCAGATGGGCTAGTCGGCTGGAATCTAATTCACTTGGACAATGCCAGCCAAGACATTGAGTTGCCTTTGGGTTTGTACACCACCATAGGGCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAATCTTTGCCTCAAGGCTGTGTTTTTCACGGAGTTATATGCTTCTGAAACTCGTAAACTGGTTGAACGTCTCATTAATTATGTCATTTACAAGGGGATGTTTCTACCATTGATTGTGCCACCAACAATTTATCAAGCAGGCCTTTGGTCAACTTGGTTGACTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGGGATCGTTTGGAACGGCTGAATGCATCTCCGGCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTTGTTTTCATGGTTGATGTTCTCTGGATAAGGTTTTGTCTGACAATATATCGAACACATGGGTCCTCTATGTATCTGTTATTATTCTTTGAGCCTTTCAGTATTGTTTTTGAGACCCTACAGGCCATTTTGATACATGGATTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGCAATGATTTCCGAACACCTAAACTGCTTGACATGTTAACTGCAGGTAGTTCATTGTTGGAATTGAAGGGAATTCTCATTCGGAACTTGGGGTTTTTCTTAGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGTGGCTTCATGGCATGGCTTTCCATCTAGTAGATGCATTCATATTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTATCAGGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAGGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCGGGTGTGCCTGAAAATCAAACAAACTCCGATGTGGGGACGATATCTAGTGATGAGCAACTTGCACGGCAAATAAGTGCTGGATTGGATCGGCCAAACTCTGCTAGGCATACCATGCCTGCAGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCCTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTGGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCTATCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCGGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATACCGCGTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCATTTCTCCCCCTGGTGGAAGATTGCCAGAAAGAACTGGTAGTTTACATTTAAGGAATGCTTCACAGTCAGCTAATGATGATGTTGCAAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCGGATGACATGATATTCCAGGACTTGCAAAGGACAAATTCAGTCACGGTTACTGTGAATAATCTCCTCCAAATGTGA 1764 0.4269 MALRVIAISVVSTVLSFVGLQFCTDLSLDKLTSDGLVGWNLIHLDNASQDIELPLGLYTTIGLLVNCMINVFILLNLCLKAVFFTELYASETRKLVERLINYVIYKGMFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPAATPWTYLRVYSALLFVFMVDVLWIRFCLTIYRTHGSSMYLLLFFEPFSIVFETLQAILIHGFQLLDIWLHHSACNSNDFRTPKLLDMLTAGSSLLELKGILIRNLGFFLDMATFFMALGHYLYIWWLHGMAFHLVDAFIFLNIRALLSAIINRIKGFIRLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGVPENQTNSDVGTISSDEQLARQISAGLDRPNSARHTMPAGLYPNQTLNTPEGVPWRGAGLDSGWWHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDTAWNLWPINPSQASASGSTISPPGGRLPERTGSLHLRNASQSANDDVANILAMAETVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01218 587 Gene3D - 546 586 - -
Gma04g01218 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
Gma04g01218 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Gma04g01218 587 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 587 - -
Gma04g01218 587 SUPERFAMILY RING/U-box 326 387 - -
Gma04g01218 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 387 IPR013083 -
Gma04g01218 587 SMART ring_2 339 380 IPR001841 -
Gma04g01218 587 Pfam Ring finger domain 337 381 IPR001841 -
Gma04g01218 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Gma04g01218 587 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Gma04g01218 587 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 587 - -
Gma04g01218 587 MobiDBLite consensus disorder prediction 416 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01218 Gma-Chr4 18107787 18145323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01218 57 422 C3H Transcription Factor Family AT3G16090 27.089 1.37e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01218 K10636 - gmx:100819656 1185.24