Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01165 ATGCTAGATAAAATCCTCCAGGCTCCTATGGTATTCTTCCAAACTAATCCAGTTGGCCGCATAATTAATAGGTTTGCAAAAGATACGGGAGATATAGATACCAATGTTTTTAATTTGGTGAACATGTTTTTGGGGCAAGTCTGGCAACTACTTTCGATATTTGTTCTTATAGGCACAAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATTTGTGCTTATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAACAACATCAGATTTACTCTTGTGAATATTAGTTCAAATCTTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGTTGATAGCAACATCTGCTGTCTTGCAGAATGCAAGAGCTGCAAACCAGGCAATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTACTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCTGTTGAGCGTGTCGACACATACATAAATTTAGAAACTGAGGCTCCTGGTGTAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCGGAACTTCCTCCAGTGCTGCATGGATTGTCCTTTACAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGGGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTTCAGAAAGGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGACTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAGAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTGCTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGAAGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTCAATGCTGGCCGAGAACTCTTACAAAATGAAGGAACAGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAAGACAGAGAATAACTCAAATGAATATAACAAGGAGTTGGAAAACCATGTGAGACAATTAGCTTCTTCTCGCTGGACTGCTGCTACTCAGTTTGCTATAGTTGCTACCCTTTCTTCATTAAGCCATCACCTTCAAAAGCCAAGTAGTGAAGACAATAAAGATATCCTTGATAAAACAAAGGATGCAATTATAACACTTCAAGAAGTTCTAGTGGGGAAGCATGATGAAGACATAGAAGAGACACTGTATAAATACCATATTCCTACAGATAGATGGTGGTCTACCCTCTGTAAAGTTATTGAAGGTCTTGCTCTCTTGAAGGGGCTGCCTCTAGACAACATTCAACATCTAGAACTTGATTTTGAAGGGAGATCTTTTGACTAA 1779 0.3969 MLDKILQAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSIFVLIGTSTAREVKRMDSITRSPVYAHFGESLNGLSSICAYKAYDRMAHINGKFMDNNIRFTLVNISSNLWLTIRLETLGGLMIWLIATSAVLQNARAANQAMFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELQKGKIIIDGCDISTFGLEDVRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWQALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVEVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLNAGRELLQNEGTAFYKMVQSTGPENAQYLCSLVFGKTENNSNEYNKELENHVRQLASSRWTAATQFAIVATLSSLSHHLQKPSSEDNKDILDKTKDAIITLQEVLVGKHDEDIEETLYKYHIPTDRWWSTLCKVIEGLALLKGLPLDNIQHLELDFEGRSFD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01165 592 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 186 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma04g01165 592 CDD ABCC_MRP_domain2 221 434 - -
Gma04g01165 592 Gene3D ABC transporter type 1, transmembrane domain 59 204 IPR036640 GO:0005524|GO:0016021
Gma04g01165 592 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 470 - -
Gma04g01165 592 ProSitePatterns ABC transporters family signature. 360 374 IPR017871 GO:0005524
Gma04g01165 592 Gene3D - 207 451 IPR027417 -
Gma04g01165 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 448 IPR027417 -
Gma04g01165 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 223 457 IPR003439 GO:0005524
Gma04g01165 592 Pfam ABC transporter 240 388 IPR003439 GO:0005524
Gma04g01165 592 Pfam ABC transporter transmembrane region 1 59 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma04g01165 592 SMART AAA_5 249 433 IPR003593 -
Gma04g01165 592 SUPERFAMILY ABC transporter transmembrane region 1 203 IPR036640 GO:0005524|GO:0016021
Gma04g01165 592 Gene3D ABC transporter type 1, transmembrane domain 1 58 IPR036640 GO:0005524|GO:0016021
Gma04g01165 592 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01165 Gma-Chr4 16756858 16761701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01165 221 449 Calmodulin-binding Proteins AT2G36910 31.535 8.33e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01165 - - gsj:114409435 1140.95