Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01135 ATGGATATAGATCTTCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATACTGGAATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCGATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGTTCTCGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACAGGTCGAAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGACGAATGTATGCTGCGATGGCTAGGCAGTTTGCCGAATACAAAACCGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAGACTCATGCTTGATTTTTTCATACAgatgcaaaatatgaattctaacttcttttatgcagtagatcttggtgaagatcaacgtctgaaaaatcttttatggattgacgctaaaagtaggaatgactatatcaacttttgtgatgtagtgtcgtttgataccgcctatgttagaaacaaatataagatgccgcttgcactttttgttggagtgaaccagcactaccaatttacattacttggatgtgccctgatatcagatgaaagtgctgccactttttcttggctatttcggacgtggctgaaaggagttggtggtcaagttccaaaagtgatcattactgaccatgacaagacattgaagtcagttatttcagatatctttcctaattccagtcattgtgtttgcctatggcatatattagggaaggtatctgaaaatttatctcctgtaattaaaaagcatgagaattttatggcaaaatttgaaaaatgcatttataggtccttgaccagtgatgattttgagaagagatggtggaaaattgttgataagtttgaacttcgagaggatgaatgcatgcagtcattgtatgaagatcgtaagttatgggcaccaacattcatgaaagatgttttcttaggtggtatgtctactgtccagcgatctgaaagtgtaaattccttctttgacaaatatgttcataagaagacctctgtccaagattttgtcaaacagtatgaagcaatcttgcaagacaggtatgaagaggaaGCAAAAGCAGATTCTGATACATGGAATAAAGTGGCAACCTTAAAAACTCCTTCTCCATTGGAGAAGAGTGTTGCAGGGATTTTCTCGCATGCTGTATTCAAGAAGATTCAAACTGAGGTTGTAGGTGCAGTTGCTTGCCATCCTAAAGCTGACAGGCAGGATGATACAACCATTGTTCACAGGGTTCATGATATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATCAAGTTAAATCTGAGTTGTCCTGTATATGTCGGTTATTTGAATACAGAGGCTATCTTTGTAGACATGCGTTGTTTGTTCTTCAATATTCTGGCCAGTCAGTGTTCCCATCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCGGAACACATGCTAACTAGGGTGCAACGTTACAATGATTTATGTCAGCGAGCACTAAAACTTAGTGAAGAGGGATCATTGTCTCAAGAGAGTTATGGTATTGCATTCCATGCGCTACATGAAGCTCACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAGAGTAGTCCTACAGAAGCTGGCACACCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACCCAAAGTAGAAATATGGGCAAGTCAAACAAAAAGAAGCATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATAACAGTTGGGGCATTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCAGTAACCCTTGAAGGTTATTATGGCACACAGCAGAGCGTGCAAGGGATGTTGAACTTGATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACACTTCAGGGGCTGGGACCAATAAGTTCAATACCAACCAGTCACGATGGTTATTATGGTACACATCAGGGCATGCCGGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCTAGACATGCATGA 2532 0.2875 MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDTGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEARLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRNDYINFCDVVSFDTAYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHILGKVSENLSPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKFELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFSHAVFKKIQTEVVGAVACHPKADRQDDTTIVHRVHDMETNKDFFVVVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDAKVRNIMGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYGIAFHALHEAHKSCVSVNNSSKSSPTEAGTPGAHGQLSTEEDTQSRNMGKSNKKKHPTKKKKVNSEAEVITVGALDNLQQMDKFSTRAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGTHQGMPGLAQLDFLRTGFTYGIRDDPNVRATQLHEDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01135 843 Pfam MULE transposase domain 288 380 IPR018289 -
Gma04g01135 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Gma04g01135 843 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 782 - -
Gma04g01135 843 MobiDBLite consensus disorder prediction 132 164 - -
Gma04g01135 843 MobiDBLite consensus disorder prediction 678 707 - -
Gma04g01135 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 782 IPR031052 GO:0006355
Gma04g01135 843 SMART 26again6 579 606 IPR006564 GO:0008270
Gma04g01135 843 MobiDBLite consensus disorder prediction 678 727 - -
Gma04g01135 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Gma04g01135 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01135 Gma-Chr4 15826130 15833106 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gma04g01135 FAR1 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01135 - - gmx:100810223 1692.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01135 04 15826130 15833106 Gma06g02793 06 51788095 51791274 GST
Gma04g01135 04 15826130 15833106 Gma15g02127 15 42898341 42899919 PCT
Gma15g02127 15 42898341 42899919 Gma04g01135 04 15826130 15833106 PCT